miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12831 5' -55.3 NC_003387.1 + 27237 0.66 0.697623
Target:  5'- cGAGCUGacacGCGCgGUCGAgGcGGCCCg -3'
miRNA:   3'- -CUUGACaac-CGCG-CAGUUgU-CCGGGa -5'
12831 5' -55.3 NC_003387.1 + 45154 0.66 0.686612
Target:  5'- -cGCUcGgaggUGGuCGCGUgAGCAGGCaCCg -3'
miRNA:   3'- cuUGA-Ca---ACC-GCGCAgUUGUCCG-GGa -5'
12831 5' -55.3 NC_003387.1 + 19398 0.66 0.686611
Target:  5'- ----cGUUGuGCaGCGUCGuGCGGGCCUUg -3'
miRNA:   3'- cuugaCAAC-CG-CGCAGU-UGUCCGGGA- -5'
12831 5' -55.3 NC_003387.1 + 37177 0.66 0.683297
Target:  5'- cGAGCUGgcGGCccggcaccccgagcGCGUgCAGCAGGCg-- -3'
miRNA:   3'- -CUUGACaaCCG--------------CGCA-GUUGUCCGgga -5'
12831 5' -55.3 NC_003387.1 + 35799 0.66 0.675546
Target:  5'- cGAGCUGUgccucGGCGcCGUCGGCGcgauGCUCUc -3'
miRNA:   3'- -CUUGACAa----CCGC-GCAGUUGUc---CGGGA- -5'
12831 5' -55.3 NC_003387.1 + 3323 0.66 0.675546
Target:  5'- -uGCUG-UGGCGUGaCAcCgAGGCCCg -3'
miRNA:   3'- cuUGACaACCGCGCaGUuG-UCCGGGa -5'
12831 5' -55.3 NC_003387.1 + 12996 0.66 0.653298
Target:  5'- cGAGCUuaaGGCGUcgucgggcaagGUCGACAGcGCCCg -3'
miRNA:   3'- -CUUGAcaaCCGCG-----------CAGUUGUC-CGGGa -5'
12831 5' -55.3 NC_003387.1 + 12905 0.67 0.63097
Target:  5'- -cACUGUUGaGCGU-UCAACAuGCCCa -3'
miRNA:   3'- cuUGACAAC-CGCGcAGUUGUcCGGGa -5'
12831 5' -55.3 NC_003387.1 + 52061 0.67 0.619803
Target:  5'- gGGGCUGggGGaGCacaUCGuGCAGGCCCUa -3'
miRNA:   3'- -CUUGACaaCCgCGc--AGU-UGUCCGGGA- -5'
12831 5' -55.3 NC_003387.1 + 46270 0.67 0.619802
Target:  5'- cGGACUcGUUGGCGaCGccgcccacgaccUCGACGgccuGGCCCg -3'
miRNA:   3'- -CUUGA-CAACCGC-GC------------AGUUGU----CCGGGa -5'
12831 5' -55.3 NC_003387.1 + 3993 0.67 0.59751
Target:  5'- aGGAUUGaggcggccgUGGCgGCGaUCAGcCAGGCCCa -3'
miRNA:   3'- -CUUGACa--------ACCG-CGC-AGUU-GUCCGGGa -5'
12831 5' -55.3 NC_003387.1 + 17556 0.67 0.586405
Target:  5'- -uACcGUUcGCGCGUCAGCccGCCCUc -3'
miRNA:   3'- cuUGaCAAcCGCGCAGUUGucCGGGA- -5'
12831 5' -55.3 NC_003387.1 + 31638 0.67 0.57534
Target:  5'- --cCUGgcuaaGCGCGUCAGCAuGCCCa -3'
miRNA:   3'- cuuGACaac--CGCGCAGUUGUcCGGGa -5'
12831 5' -55.3 NC_003387.1 + 499 0.68 0.55336
Target:  5'- -uGCUGUUGaCuCGUCAGCAGGCUg- -3'
miRNA:   3'- cuUGACAACcGcGCAGUUGUCCGGga -5'
12831 5' -55.3 NC_003387.1 + 15089 0.69 0.500717
Target:  5'- -cGCUGUUGGagcccccgcggaucgGCGUCAACGgGGCgCCUg -3'
miRNA:   3'- cuUGACAACCg--------------CGCAGUUGU-CCG-GGA- -5'
12831 5' -55.3 NC_003387.1 + 19711 0.69 0.499664
Target:  5'- uGAACUGcaUGGCGUa-CAGCAcGGCCCg -3'
miRNA:   3'- -CUUGACa-ACCGCGcaGUUGU-CCGGGa -5'
12831 5' -55.3 NC_003387.1 + 19285 0.69 0.499664
Target:  5'- cGAGgUGgUGGCGCGcagCAGCAGGCa-- -3'
miRNA:   3'- -CUUgACaACCGCGCa--GUUGUCCGgga -5'
12831 5' -55.3 NC_003387.1 + 21311 0.69 0.489194
Target:  5'- cGAGCag-UGGCGCGUgAGCGGGgCUg -3'
miRNA:   3'- -CUUGacaACCGCGCAgUUGUCCgGGa -5'
12831 5' -55.3 NC_003387.1 + 6082 0.69 0.468571
Target:  5'- cGACcGccggGGCGuCGUCGGCAGGCUCg -3'
miRNA:   3'- cUUGaCaa--CCGC-GCAGUUGUCCGGGa -5'
12831 5' -55.3 NC_003387.1 + 49058 0.69 0.458428
Target:  5'- -cGCUGcUGGCGC-UCAccggGCAGGCUCg -3'
miRNA:   3'- cuUGACaACCGCGcAGU----UGUCCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.