miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12833 3' -55.2 NC_003387.1 + 8088 0.66 0.714647
Target:  5'- uGCCgGUCGGCGCcaacccgcccGAGGGCgaGCCCagcUCGUa -3'
miRNA:   3'- -UGGgCAGUUGUG----------CUUUCG--CGGG---AGCG- -5'
12833 3' -55.2 NC_003387.1 + 46970 0.66 0.714647
Target:  5'- aGCUCGUCGGC-CGAGgcguucAGCucGUCCUCGg -3'
miRNA:   3'- -UGGGCAGUUGuGCUU------UCG--CGGGAGCg -5'
12833 3' -55.2 NC_003387.1 + 39163 0.66 0.714647
Target:  5'- uGCCCGUCGAU-CG--GGCuGCCCagGCc -3'
miRNA:   3'- -UGGGCAGUUGuGCuuUCG-CGGGagCG- -5'
12833 3' -55.2 NC_003387.1 + 4650 0.66 0.714647
Target:  5'- cACCCGUCGAgGCGcuucGGGGCGCgguaGCg -3'
miRNA:   3'- -UGGGCAGUUgUGC----UUUCGCGggagCG- -5'
12833 3' -55.2 NC_003387.1 + 9015 0.66 0.714647
Target:  5'- -gCCGUCGAgcacCugGcgGGCGCCgUCGg -3'
miRNA:   3'- ugGGCAGUU----GugCuuUCGCGGgAGCg -5'
12833 3' -55.2 NC_003387.1 + 45759 0.66 0.714647
Target:  5'- cGCCC-UCGACgaggGCGGccagcaGGGUGCCCUcaCGCa -3'
miRNA:   3'- -UGGGcAGUUG----UGCU------UUCGCGGGA--GCG- -5'
12833 3' -55.2 NC_003387.1 + 29016 0.66 0.713576
Target:  5'- cGCCCGUCcgaagucAGCAaac-AGCGCcCCUCGg -3'
miRNA:   3'- -UGGGCAG-------UUGUgcuuUCGCG-GGAGCg -5'
12833 3' -55.2 NC_003387.1 + 9511 0.66 0.704983
Target:  5'- cCCCGaCGGCACGAccguggccgucaagcGGUGCCUgCGCa -3'
miRNA:   3'- uGGGCaGUUGUGCUu--------------UCGCGGGaGCG- -5'
12833 3' -55.2 NC_003387.1 + 39761 0.66 0.703905
Target:  5'- aGCUCGcCGACGCGGu-GCGCaagCGCa -3'
miRNA:   3'- -UGGGCaGUUGUGCUuuCGCGggaGCG- -5'
12833 3' -55.2 NC_003387.1 + 48306 0.66 0.703905
Target:  5'- cGCCCGccUCGACGaaauCGAGgcGGCGCgCgagCGCg -3'
miRNA:   3'- -UGGGC--AGUUGU----GCUU--UCGCGgGa--GCG- -5'
12833 3' -55.2 NC_003387.1 + 19875 0.66 0.703905
Target:  5'- -gUCGgCGACGCGGAAcCGCCC-CGCc -3'
miRNA:   3'- ugGGCaGUUGUGCUUUcGCGGGaGCG- -5'
12833 3' -55.2 NC_003387.1 + 50957 0.66 0.703905
Target:  5'- --aCGcCAGCGCG-AAGCGCCCcCGa -3'
miRNA:   3'- uggGCaGUUGUGCuUUCGCGGGaGCg -5'
12833 3' -55.2 NC_003387.1 + 21805 0.66 0.703905
Target:  5'- gGCCCGgugCAGCcCGAcgggagcuggGAGCGCaagCGCa -3'
miRNA:   3'- -UGGGCa--GUUGuGCU----------UUCGCGggaGCG- -5'
12833 3' -55.2 NC_003387.1 + 14801 0.66 0.703905
Target:  5'- uGCCCGgCGgugccgagccACGCGGgcagcGGGuCGCCCUCGg -3'
miRNA:   3'- -UGGGCaGU----------UGUGCU-----UUC-GCGGGAGCg -5'
12833 3' -55.2 NC_003387.1 + 28174 0.66 0.703905
Target:  5'- aACCCGgCGACAguuuCGcucGGC-CCCUCGCc -3'
miRNA:   3'- -UGGGCaGUUGU----GCuu-UCGcGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 32845 0.66 0.703905
Target:  5'- gGCCC---AGCACGGugucuugcaGGGCGCCCagCGCc -3'
miRNA:   3'- -UGGGcagUUGUGCU---------UUCGCGGGa-GCG- -5'
12833 3' -55.2 NC_003387.1 + 43806 0.66 0.703905
Target:  5'- gGCCucggaCGUgAGCACGu---UGCCCUCGCc -3'
miRNA:   3'- -UGG-----GCAgUUGUGCuuucGCGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 5825 0.66 0.693093
Target:  5'- cCCCGcgCAAgGCGgcGGCGgCCUCa- -3'
miRNA:   3'- uGGGCa-GUUgUGCuuUCGCgGGAGcg -5'
12833 3' -55.2 NC_003387.1 + 3150 0.66 0.693093
Target:  5'- cGCCCGgCAGCG----GGCGCaCCUCGg -3'
miRNA:   3'- -UGGGCaGUUGUgcuuUCGCG-GGAGCg -5'
12833 3' -55.2 NC_003387.1 + 50248 0.66 0.693093
Target:  5'- cGCCguaCGUCAGCGcCGGGcGGUGCaCCUCGg -3'
miRNA:   3'- -UGG---GCAGUUGU-GCUU-UCGCG-GGAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.