miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12833 5' -58.6 NC_003387.1 + 43118 0.66 0.500241
Target:  5'- gCGACGGcGcGGCGCCgCG-GUGGUGGGc -3'
miRNA:   3'- -GCUGUC-C-CCGCGGaGCaCAUCGUCUa -5'
12833 5' -58.6 NC_003387.1 + 1762 0.66 0.490007
Target:  5'- uCGGCucGGGGGCGCUUCGcGcUGGCguucAGAUc -3'
miRNA:   3'- -GCUG--UCCCCGCGGAGCaC-AUCG----UCUA- -5'
12833 5' -58.6 NC_003387.1 + 15346 0.67 0.450108
Target:  5'- cCGACAgcGGGGCGCCgccgccCGacagGUGccGCAGAUa -3'
miRNA:   3'- -GCUGU--CCCCGCGGa-----GCa---CAU--CGUCUA- -5'
12833 5' -58.6 NC_003387.1 + 4640 0.67 0.440413
Target:  5'- gCGGCAGcgccacccgucGaGGCGCUUCGgggcgcgGUAGCGGGUg -3'
miRNA:   3'- -GCUGUC-----------C-CCGCGGAGCa------CAUCGUCUA- -5'
12833 5' -58.6 NC_003387.1 + 22957 0.67 0.429888
Target:  5'- uGACcgcguGGGGCGCCccggucaUCGUGUcgGGCGGc- -3'
miRNA:   3'- gCUGu----CCCCGCGG-------AGCACA--UCGUCua -5'
12833 5' -58.6 NC_003387.1 + 27921 0.67 0.421387
Target:  5'- cCGGCGGcguGGGCGCCUCGg--GGgGGGc -3'
miRNA:   3'- -GCUGUC---CCCGCGGAGCacaUCgUCUa -5'
12833 5' -58.6 NC_003387.1 + 22661 0.67 0.421387
Target:  5'- cCGGCGGccgucaGGGCGCgCUCGUG-GGCGGu- -3'
miRNA:   3'- -GCUGUC------CCCGCG-GAGCACaUCGUCua -5'
12833 5' -58.6 NC_003387.1 + 2199 0.69 0.342261
Target:  5'- gCGGgcuCAGGGGUGCCUCGUGcucgccGGuCAGGc -3'
miRNA:   3'- -GCU---GUCCCCGCGGAGCACa-----UC-GUCUa -5'
12833 5' -58.6 NC_003387.1 + 30693 0.71 0.247921
Target:  5'- cCGGCGGGGGCGuUUUCGUGcgccuGCGGGg -3'
miRNA:   3'- -GCUGUCCCCGC-GGAGCACau---CGUCUa -5'
12833 5' -58.6 NC_003387.1 + 22882 1.05 0.000802
Target:  5'- uCGACAGGGGCGCCUCGUGUAGCAGAUu -3'
miRNA:   3'- -GCUGUCCCCGCGGAGCACAUCGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.