Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12834 | 3' | -56.2 | NC_003387.1 | + | 22323 | 1.08 | 0.000911 |
Target: 5'- gCUCGGGCAGCCACACGAUCAUGGUCGu -3' miRNA: 3'- -GAGCCCGUCGGUGUGCUAGUACCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 52420 | 0.66 | 0.651727 |
Target: 5'- gCUCGGGCu-CCACcggcuCGGUCGUGaUCGu -3' miRNA: 3'- -GAGCCCGucGGUGu----GCUAGUACcAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 42020 | 0.69 | 0.446836 |
Target: 5'- gCUCGcccggcuugauaccGGCGGCCACcgccgagGCGGcCGUGGUCGc -3' miRNA: 3'- -GAGC--------------CCGUCGGUG-------UGCUaGUACCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 48810 | 0.69 | 0.480638 |
Target: 5'- -cCGGGCGuuagcacCCAgGCGGUCAgGGUCGg -3' miRNA: 3'- gaGCCCGUc------GGUgUGCUAGUaCCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 46588 | 0.68 | 0.521923 |
Target: 5'- cCUCGGGCAgggucGCCAgCACcggcaGGUgCGUGGUCu -3' miRNA: 3'- -GAGCCCGU-----CGGU-GUG-----CUA-GUACCAGc -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 20472 | 0.66 | 0.651727 |
Target: 5'- cCUCGGcGaCGGCCAgGCGGUCGgccagcucGUCGc -3' miRNA: 3'- -GAGCC-C-GUCGGUgUGCUAGUac------CAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 14271 | 0.66 | 0.651727 |
Target: 5'- -aCGGGCAGaaCACGCaGUCGUGGg-- -3' miRNA: 3'- gaGCCCGUCg-GUGUGcUAGUACCagc -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 33437 | 0.66 | 0.629838 |
Target: 5'- aUCGGGCuGCCcgAgGCGGUCA-GGcCGc -3' miRNA: 3'- gAGCCCGuCGG--UgUGCUAGUaCCaGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 10771 | 0.66 | 0.629838 |
Target: 5'- cCUCGcuGGCGGCCuGCAUcGUCG-GGUCGu -3' miRNA: 3'- -GAGC--CCGUCGG-UGUGcUAGUaCCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 22654 | 0.66 | 0.629838 |
Target: 5'- gCUCGccccGGCGGCCgucaggGCGCGcUCGUGGgCGg -3' miRNA: 3'- -GAGC----CCGUCGG------UGUGCuAGUACCaGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 36000 | 0.67 | 0.607957 |
Target: 5'- aCUCGGcGUcGUCGC-CGAUCAcgaGGUCGa -3' miRNA: 3'- -GAGCC-CGuCGGUGuGCUAGUa--CCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 46937 | 0.67 | 0.590508 |
Target: 5'- -gCGGGCGgcuuguucuggucacGCCAgGCGAUCAgcucGUCGg -3' miRNA: 3'- gaGCCCGU---------------CGGUgUGCUAGUac--CAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 48540 | 0.67 | 0.586158 |
Target: 5'- gUCGGGCGGCUgAUACGAgcCGUugcGGUCu -3' miRNA: 3'- gAGCCCGUCGG-UGUGCUa-GUA---CCAGc -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 50958 | 0.67 | 0.586158 |
Target: 5'- gCUCGGGCGccagcgccGCCGC-CGGgcUCAUGcuGUCGa -3' miRNA: 3'- -GAGCCCGU--------CGGUGuGCU--AGUAC--CAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 14737 | 0.67 | 0.575311 |
Target: 5'- gUCGcGCAGCCAggcgucgACGAUC-UGGUCGu -3' miRNA: 3'- gAGCcCGUCGGUg------UGCUAGuACCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 33969 | 0.67 | 0.564511 |
Target: 5'- gUCGGGUAugagcuGCCGCAgcgGGUCGcGGUCGa -3' miRNA: 3'- gAGCCCGU------CGGUGUg--CUAGUaCCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 9714 | 0.67 | 0.564511 |
Target: 5'- gCUCGGGguGUUcaGCGCGuacgggucggcGUCAaGGUCGg -3' miRNA: 3'- -GAGCCCguCGG--UGUGC-----------UAGUaCCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 34419 | 0.68 | 0.54308 |
Target: 5'- -cCGGGC-GCCACcgccGCGG-CcgGGUCGg -3' miRNA: 3'- gaGCCCGuCGGUG----UGCUaGuaCCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 49790 | 0.68 | 0.532463 |
Target: 5'- -gCGGGUuggcGCCgaaccgcgACACGAUCAgccGGUCGa -3' miRNA: 3'- gaGCCCGu---CGG--------UGUGCUAGUa--CCAGC- -5' |
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12834 | 3' | -56.2 | NC_003387.1 | + | 28848 | 0.68 | 0.532463 |
Target: 5'- gUCGGcCAGCCACACcgGGUCGccGGUCc -3' miRNA: 3'- gAGCCcGUCGGUGUG--CUAGUa-CCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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