miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12834 5' -56.7 NC_003387.1 + 44615 0.66 0.669821
Target:  5'- cGUCgGGC-CGUGGcgcgagcGUGUGGCCcugGCCGcGGc -3'
miRNA:   3'- -CAG-CUGaGCACU-------UACACCGG---CGGC-CC- -5'
12834 5' -56.7 NC_003387.1 + 29669 0.66 0.649312
Target:  5'- -aCGGCguagugCGUGAucgGcacGCCGCCGGGc -3'
miRNA:   3'- caGCUGa-----GCACUua-Cac-CGGCGGCCC- -5'
12834 5' -56.7 NC_003387.1 + 47918 0.66 0.638491
Target:  5'- -aCGACUUGccguUGUGGCCGUcgccgCGGGc -3'
miRNA:   3'- caGCUGAGCacuuACACCGGCG-----GCCC- -5'
12834 5' -56.7 NC_003387.1 + 50580 0.66 0.627664
Target:  5'- aUCGAgucCUCGggGAAcuccacGUcGGCCGCUGGGg -3'
miRNA:   3'- cAGCU---GAGCa-CUUa-----CA-CCGGCGGCCC- -5'
12834 5' -56.7 NC_003387.1 + 14396 0.67 0.606032
Target:  5'- --gGACUCGUG---GUGGUCGUCGuGGu -3'
miRNA:   3'- cagCUGAGCACuuaCACCGGCGGC-CC- -5'
12834 5' -56.7 NC_003387.1 + 47217 0.67 0.595244
Target:  5'- uGUCGGCaUUGUG-GUG-GGCCucggccagguGCCGGGc -3'
miRNA:   3'- -CAGCUG-AGCACuUACaCCGG----------CGGCCC- -5'
12834 5' -56.7 NC_003387.1 + 30597 0.67 0.584486
Target:  5'- cGUCGcCgUCGUau-UGccgccagGGCCGCCGGGg -3'
miRNA:   3'- -CAGCuG-AGCAcuuACa------CCGGCGGCCC- -5'
12834 5' -56.7 NC_003387.1 + 11434 0.67 0.584486
Target:  5'- cGUCGguGCUCGUGcccgcgcUGcagcucGCCGCCGGGg -3'
miRNA:   3'- -CAGC--UGAGCACuu-----ACac----CGGCGGCCC- -5'
12834 5' -56.7 NC_003387.1 + 10947 0.67 0.584486
Target:  5'- gGUCGACUC-UGAGacuuuCCGCCGGGu -3'
miRNA:   3'- -CAGCUGAGcACUUacaccGGCGGCCC- -5'
12834 5' -56.7 NC_003387.1 + 23419 0.68 0.531427
Target:  5'- -gCG-CUCGUGcccGcGGUCGCCGGGg -3'
miRNA:   3'- caGCuGAGCACuuaCaCCGGCGGCCC- -5'
12834 5' -56.7 NC_003387.1 + 32062 0.68 0.521011
Target:  5'- aGUCGACggUGUcGAAcGUGuuCGCCGGGa -3'
miRNA:   3'- -CAGCUGa-GCA-CUUaCACcgGCGGCCC- -5'
12834 5' -56.7 NC_003387.1 + 25170 0.69 0.450659
Target:  5'- uUCGGCUCGgcgcgGUGGCC-CCGGc -3'
miRNA:   3'- cAGCUGAGCacuuaCACCGGcGGCCc -5'
12834 5' -56.7 NC_003387.1 + 10684 0.7 0.41287
Target:  5'- -aCGGC-CGccucGGcgGUGGCCGCCGGu -3'
miRNA:   3'- caGCUGaGCa---CUuaCACCGGCGGCCc -5'
12834 5' -56.7 NC_003387.1 + 34965 0.71 0.385845
Target:  5'- -cCGACgcCGUGAugagcgGUGUGGCCccuggcggcccgGCCGGGc -3'
miRNA:   3'- caGCUGa-GCACU------UACACCGG------------CGGCCC- -5'
12834 5' -56.7 NC_003387.1 + 47187 0.71 0.3771
Target:  5'- gGUCGccCUCG-GGGcucagGUGGCCGCCGGu -3'
miRNA:   3'- -CAGCu-GAGCaCUUa----CACCGGCGGCCc -5'
12834 5' -56.7 NC_003387.1 + 36613 0.73 0.2972
Target:  5'- uUCGACUCGcGGcUGcUGGCCGCCGcGa -3'
miRNA:   3'- cAGCUGAGCaCUuAC-ACCGGCGGC-Cc -5'
12834 5' -56.7 NC_003387.1 + 48998 0.8 0.089537
Target:  5'- cGUCGAUcgCGUGGcUGUGGCCGCUGGc -3'
miRNA:   3'- -CAGCUGa-GCACUuACACCGGCGGCCc -5'
12834 5' -56.7 NC_003387.1 + 22372 1.09 0.000797
Target:  5'- gGUCGACUCGUGAAUGUGGCCGCCGGGc -3'
miRNA:   3'- -CAGCUGAGCACUUACACCGGCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.