Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12835 | 3' | -50.5 | NC_003387.1 | + | 30870 | 0.67 | 0.879263 |
Target: 5'- gCGUcgGCACCugGUGCGcCGGUg---UCc -3' miRNA: 3'- -GCA--CGUGGugCAUGCcGCCAauaaAG- -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 32838 | 0.68 | 0.862919 |
Target: 5'- --cGCACCGCGgggcGgGGCGGUUccgcgUCg -3' miRNA: 3'- gcaCGUGGUGCa---UgCCGCCAAuaa--AG- -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 38074 | 0.68 | 0.854356 |
Target: 5'- --aGCGCCGCGUcacugugcGCGGCGGc------ -3' miRNA: 3'- gcaCGUGGUGCA--------UGCCGCCaauaaag -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 2470 | 0.68 | 0.854356 |
Target: 5'- gGUGCACCgcccggcgcugACGUACGGCGccucgUAUg-- -3' miRNA: 3'- gCACGUGG-----------UGCAUGCCGCca---AUAaag -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 31024 | 0.7 | 0.72422 |
Target: 5'- gCGUGCGCCGgG-GCGGCGGc------ -3' miRNA: 3'- -GCACGUGGUgCaUGCCGCCaauaaag -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 22093 | 0.66 | 0.927621 |
Target: 5'- gCGUGgGgCACGUACGGCGc------- -3' miRNA: 3'- -GCACgUgGUGCAUGCCGCcaauaaag -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 39060 | 0.67 | 0.870405 |
Target: 5'- uCGUGCuuacucacgguugACCACGUcGCGGuCGGgccgUUCg -3' miRNA: 3'- -GCACG-------------UGGUGCA-UGCC-GCCaauaAAG- -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 48437 | 0.66 | 0.933358 |
Target: 5'- --aGCACCGCGUGCaGUucaucgagGGUUAcgUCg -3' miRNA: 3'- gcaCGUGGUGCAUGcCG--------CCAAUaaAG- -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 42230 | 0.66 | 0.921588 |
Target: 5'- --cGCACCGCG-AUGGgcgaGGUUGUgUCg -3' miRNA: 3'- gcaCGUGGUGCaUGCCg---CCAAUAaAG- -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 17175 | 0.66 | 0.915259 |
Target: 5'- gGUGCGCCGCcuggGCGGCGa------- -3' miRNA: 3'- gCACGUGGUGca--UGCCGCcaauaaag -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 32991 | 0.66 | 0.921588 |
Target: 5'- aCGUGC-CCGCGUuCGaGCGGg------ -3' miRNA: 3'- -GCACGuGGUGCAuGC-CGCCaauaaag -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 24920 | 0.66 | 0.933358 |
Target: 5'- aGUGCguugugaccGCCGCGaccgACGGCGGg------ -3' miRNA: 3'- gCACG---------UGGUGCa---UGCCGCCaauaaag -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 46470 | 0.66 | 0.927621 |
Target: 5'- uCGUGCACCGgGaugaugACGGCG---AUUUCc -3' miRNA: 3'- -GCACGUGGUgCa-----UGCCGCcaaUAAAG- -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 10932 | 0.66 | 0.921588 |
Target: 5'- gCGUGCGCCAgGUcGCGGCa-------- -3' miRNA: 3'- -GCACGUGGUgCA-UGCCGccaauaaag -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 37741 | 0.75 | 0.478893 |
Target: 5'- uGUGCGCCAcCGUgcGCGGCGGg------ -3' miRNA: 3'- gCACGUGGU-GCA--UGCCGCCaauaaag -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 44461 | 0.71 | 0.668254 |
Target: 5'- uGUGCACCu--UGCGGUGGUUGg--- -3' miRNA: 3'- gCACGUGGugcAUGCCGCCAAUaaag -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 23966 | 0.71 | 0.70204 |
Target: 5'- aCGUGCGCaGCGccggGCGGCuGGUUGUg-- -3' miRNA: 3'- -GCACGUGgUGCa---UGCCG-CCAAUAaag -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 20347 | 0.71 | 0.713173 |
Target: 5'- uGUGUcggccagcccccGCCuCGUGCGGgGGUUGUgUCg -3' miRNA: 3'- gCACG------------UGGuGCAUGCCgCCAAUAaAG- -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 51353 | 0.67 | 0.90172 |
Target: 5'- -uUGCGCCAC-UGCGaGCGGUcg--UCg -3' miRNA: 3'- gcACGUGGUGcAUGC-CGCCAauaaAG- -5' |
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12835 | 3' | -50.5 | NC_003387.1 | + | 2368 | 0.69 | 0.787996 |
Target: 5'- --aGCGCCACGUAC-GCGGUc----- -3' miRNA: 3'- gcaCGUGGUGCAUGcCGCCAauaaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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