miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12838 3' -62.7 NC_003387.1 + 9713 0.66 0.342363
Target:  5'- cGCUCGGGGUguucaGCGCguacGGGUcggcgucaAGGuCGGCc -3'
miRNA:   3'- aCGGGCUCCGa----CGCG----UCCA--------UCC-GCCG- -5'
12838 3' -62.7 NC_003387.1 + 27233 0.66 0.342363
Target:  5'- cGgCCGAG-CUGacaCGCGcGGUcgAGGCGGCc -3'
miRNA:   3'- aCgGGCUCcGAC---GCGU-CCA--UCCGCCG- -5'
12838 3' -62.7 NC_003387.1 + 29405 0.66 0.342363
Target:  5'- cGCCCGccGg-GCGCAGG-AGGaGGCc -3'
miRNA:   3'- aCGGGCucCgaCGCGUCCaUCCgCCG- -5'
12838 3' -62.7 NC_003387.1 + 41214 0.66 0.342363
Target:  5'- cUGCCCGAauaagcacGGCaacuccGCGguGcauGGCGGCg -3'
miRNA:   3'- -ACGGGCU--------CCGa-----CGCguCcauCCGCCG- -5'
12838 3' -62.7 NC_003387.1 + 31033 0.66 0.334485
Target:  5'- cGCucgCCGAGGCgGC-CAGGgcGuCGGCg -3'
miRNA:   3'- aCG---GGCUCCGaCGcGUCCauCcGCCG- -5'
12838 3' -62.7 NC_003387.1 + 16262 0.66 0.334485
Target:  5'- uUGCCaucGGCUGCGCc--UGGGCGaGCu -3'
miRNA:   3'- -ACGGgcuCCGACGCGuccAUCCGC-CG- -5'
12838 3' -62.7 NC_003387.1 + 52633 0.66 0.334485
Target:  5'- aGCUCGGGGUccaUGUGUcugccuccuGGUGGuGUGGCg -3'
miRNA:   3'- aCGGGCUCCG---ACGCGu--------CCAUC-CGCCG- -5'
12838 3' -62.7 NC_003387.1 + 12444 0.66 0.326739
Target:  5'- cGCugCCGAGGUU-CGCuGGc-GGCGGCc -3'
miRNA:   3'- aCG--GGCUCCGAcGCGuCCauCCGCCG- -5'
12838 3' -62.7 NC_003387.1 + 1176 0.66 0.326739
Target:  5'- gGCagCGGuagcGGCggGCGCAGGggcaaGGGUGGCc -3'
miRNA:   3'- aCGg-GCU----CCGa-CGCGUCCa----UCCGCCG- -5'
12838 3' -62.7 NC_003387.1 + 28159 0.66 0.325972
Target:  5'- aGCCCGGccagcucGGCU-CGCcguauuGGUucgucuuucaGGGCGGCg -3'
miRNA:   3'- aCGGGCU-------CCGAcGCGu-----CCA----------UCCGCCG- -5'
12838 3' -62.7 NC_003387.1 + 5658 0.66 0.324442
Target:  5'- cGCgCCGAGcaaGCcgaguucacuucucUGCGCAGcaAGGUGGCg -3'
miRNA:   3'- aCG-GGCUC---CG--------------ACGCGUCcaUCCGCCG- -5'
12838 3' -62.7 NC_003387.1 + 24794 0.66 0.323679
Target:  5'- cGCUCGGGGUcgcggccgaccugGCGCAGcagcucggcGUacucGGGCGGCu -3'
miRNA:   3'- aCGGGCUCCGa------------CGCGUC---------CA----UCCGCCG- -5'
12838 3' -62.7 NC_003387.1 + 30299 0.66 0.319128
Target:  5'- cGCCUGGGaCgacGCGCauuaccAGGgcuGGCGGCg -3'
miRNA:   3'- aCGGGCUCcGa--CGCG------UCCau-CCGCCG- -5'
12838 3' -62.7 NC_003387.1 + 27068 0.66 0.319128
Target:  5'- aGCUgauCGAGaaGCUGcCGCAGcaGUGGGuCGGCa -3'
miRNA:   3'- aCGG---GCUC--CGAC-GCGUC--CAUCC-GCCG- -5'
12838 3' -62.7 NC_003387.1 + 35630 0.66 0.319128
Target:  5'- aGCCCgccGAGGCgGC-CGGGcGGGCacuGGCc -3'
miRNA:   3'- aCGGG---CUCCGaCGcGUCCaUCCG---CCG- -5'
12838 3' -62.7 NC_003387.1 + 10103 0.66 0.319128
Target:  5'- uUGCUCG-GGCUGCauggggGCgaGGGUcaccGGGCGGg -3'
miRNA:   3'- -ACGGGCuCCGACG------CG--UCCA----UCCGCCg -5'
12838 3' -62.7 NC_003387.1 + 1280 0.66 0.319128
Target:  5'- gGCUgCGcGGCguucgaccgGCGCAGuucgAGGCGGCg -3'
miRNA:   3'- aCGG-GCuCCGa--------CGCGUCca--UCCGCCG- -5'
12838 3' -62.7 NC_003387.1 + 27581 0.66 0.319128
Target:  5'- aGcCCCGAucGGCUGCGC-GGUGuGCcGCu -3'
miRNA:   3'- aC-GGGCU--CCGACGCGuCCAUcCGcCG- -5'
12838 3' -62.7 NC_003387.1 + 14912 0.66 0.318374
Target:  5'- gGCCCGAucgcGcGCUGCugcgaccGCGGGUgcugcgcccAGGCGcGCu -3'
miRNA:   3'- aCGGGCU----C-CGACG-------CGUCCA---------UCCGC-CG- -5'
12838 3' -62.7 NC_003387.1 + 48163 0.66 0.314626
Target:  5'- gGCCCGcgcGGUcGCGCaggcgcaggcccgcaAGGUGcccgcaccGGCGGCg -3'
miRNA:   3'- aCGGGCu--CCGaCGCG---------------UCCAU--------CCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.