miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12838 5' -60 NC_003387.1 + 24194 0.66 0.426722
Target:  5'- uUGUCGCCgggcuuggUGUUCCACUGCcGGUu- -3'
miRNA:   3'- uACGGCGGa-------GCAAGGUGGCGcCCAuu -5'
12838 5' -60 NC_003387.1 + 18509 0.66 0.426722
Target:  5'- -aGCaUGCuCUCGggCCGCCGCGGuGg-- -3'
miRNA:   3'- uaCG-GCG-GAGCaaGGUGGCGCC-Cauu -5'
12838 5' -60 NC_003387.1 + 30610 0.66 0.417345
Target:  5'- uUGCCGCCa-GggCCGCCG-GGGa-- -3'
miRNA:   3'- uACGGCGGagCaaGGUGGCgCCCauu -5'
12838 5' -60 NC_003387.1 + 2183 0.66 0.389983
Target:  5'- -cGCC-CCcCGagCCACCGCGGGc-- -3'
miRNA:   3'- uaCGGcGGaGCaaGGUGGCGCCCauu -5'
12838 5' -60 NC_003387.1 + 12577 0.67 0.381126
Target:  5'- -gGCCGCCgaCGgugUCGCCGUGGGc-- -3'
miRNA:   3'- uaCGGCGGa-GCaa-GGUGGCGCCCauu -5'
12838 5' -60 NC_003387.1 + 9894 0.67 0.372405
Target:  5'- -cGCCGCCaugaUCGccucgCCGCCGuCGGGg-- -3'
miRNA:   3'- uaCGGCGG----AGCaa---GGUGGC-GCCCauu -5'
12838 5' -60 NC_003387.1 + 8514 0.67 0.363821
Target:  5'- aGUGUC-CCUCGggCCGaccggcUCGCGGGUAGu -3'
miRNA:   3'- -UACGGcGGAGCaaGGU------GGCGCCCAUU- -5'
12838 5' -60 NC_003387.1 + 36675 0.67 0.363821
Target:  5'- -cGCCGaCCUgGccgcgUUCACCGCGGGc-- -3'
miRNA:   3'- uaCGGC-GGAgCa----AGGUGGCGCCCauu -5'
12838 5' -60 NC_003387.1 + 6765 0.67 0.338899
Target:  5'- -cGCaCGCCUCGccCUugCGCGGGc-- -3'
miRNA:   3'- uaCG-GCGGAGCaaGGugGCGCCCauu -5'
12838 5' -60 NC_003387.1 + 45199 0.68 0.334067
Target:  5'- aGUGCCGCuCUCGUUcacccucggCCGCagacucgucacccaGCGGGUGc -3'
miRNA:   3'- -UACGGCG-GAGCAA---------GGUGg-------------CGCCCAUu -5'
12838 5' -60 NC_003387.1 + 6361 0.68 0.322987
Target:  5'- cGUGUCGCgCUUGgccUCgGCCGCGGGc-- -3'
miRNA:   3'- -UACGGCG-GAGCa--AGgUGGCGCCCauu -5'
12838 5' -60 NC_003387.1 + 29955 0.68 0.300174
Target:  5'- uUGCCGaCCUCGcgCCGuuUCGCGaGGUAu -3'
miRNA:   3'- uACGGC-GGAGCaaGGU--GGCGC-CCAUu -5'
12838 5' -60 NC_003387.1 + 49191 0.69 0.258331
Target:  5'- -aGCCGCCUgGggCgGCgGCGGGg-- -3'
miRNA:   3'- uaCGGCGGAgCaaGgUGgCGCCCauu -5'
12838 5' -60 NC_003387.1 + 3504 0.7 0.227207
Target:  5'- -gGCCGCCUCGaccggcagaUCCGuuGCGGGc-- -3'
miRNA:   3'- uaCGGCGGAGCa--------AGGUggCGCCCauu -5'
12838 5' -60 NC_003387.1 + 27667 0.7 0.221377
Target:  5'- -cGCCGCUggcCGUca-GCCGCGGGUAAc -3'
miRNA:   3'- uaCGGCGGa--GCAaggUGGCGCCCAUU- -5'
12838 5' -60 NC_003387.1 + 10686 0.7 0.221377
Target:  5'- -gGCCGCCUCGgcggUgGCCGCcGGUAu -3'
miRNA:   3'- uaCGGCGGAGCaa--GgUGGCGcCCAUu -5'
12838 5' -60 NC_003387.1 + 28840 0.72 0.160901
Target:  5'- uGUGCuCGCCgaCGUUCgACUGCGGGUc- -3'
miRNA:   3'- -UACG-GCGGa-GCAAGgUGGCGCCCAuu -5'
12838 5' -60 NC_003387.1 + 47773 0.76 0.084982
Target:  5'- -cGCCGCCUCGUUCaucguccacagcUugCGCGGGUc- -3'
miRNA:   3'- uaCGGCGGAGCAAG------------GugGCGCCCAuu -5'
12838 5' -60 NC_003387.1 + 34694 0.78 0.06212
Target:  5'- -cGCCGCCUCGggCacgcuguacaGCCGCGGGUGc -3'
miRNA:   3'- uaCGGCGGAGCaaGg---------UGGCGCCCAUu -5'
12838 5' -60 NC_003387.1 + 18131 1.03 0.000692
Target:  5'- aAUGCCGCCUCGUUCCACCGCGGGUAAc -3'
miRNA:   3'- -UACGGCGGAGCAAGGUGGCGCCCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.