Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1284 | 5' | -60.5 | NC_001317.1 | + | 2801 | 0.66 | 0.29691 |
Target: 5'- cGCGCUcGCCG-GUGGCcaGCuCUGCGaCGAu -3' miRNA: 3'- -CGUGAaCGGCgCGUCG--CG-GACGC-GCU- -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 9484 | 0.66 | 0.289455 |
Target: 5'- uUACcgGCaagGUGCAGCGCaugGCGCGGg -3' miRNA: 3'- cGUGaaCGg--CGCGUCGCGga-CGCGCU- -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 10991 | 0.66 | 0.289455 |
Target: 5'- gGCAUaaGCCa-GCA-UGCCUGCGCGAg -3' miRNA: 3'- -CGUGaaCGGcgCGUcGCGGACGCGCU- -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 27366 | 0.66 | 0.282148 |
Target: 5'- gGCGCg-GCCGCuugcgacgcauuGCGGCuGCaugGCGCGAa -3' miRNA: 3'- -CGUGaaCGGCG------------CGUCG-CGga-CGCGCU- -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 6492 | 0.66 | 0.274987 |
Target: 5'- cGCGCUgaaaCUGCGcCAGCGCCUcUGCa- -3' miRNA: 3'- -CGUGAac--GGCGC-GUCGCGGAcGCGcu -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 17226 | 0.66 | 0.270062 |
Target: 5'- cGCGCUUGCUGCaucaucuGCAGaggcugcaguauuguCGCCgacgugGCGCGc -3' miRNA: 3'- -CGUGAACGGCG-------CGUC---------------GCGGa-----CGCGCu -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 1806 | 0.66 | 0.261104 |
Target: 5'- -----aGCUGCGUuGCGCCaaucugGCGCGAu -3' miRNA: 3'- cgugaaCGGCGCGuCGCGGa-----CGCGCU- -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 16967 | 0.66 | 0.261104 |
Target: 5'- -aGCUUGCCGguaacauggcCGCAGCagGCgCUGCGgGGu -3' miRNA: 3'- cgUGAACGGC----------GCGUCG--CG-GACGCgCU- -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 6636 | 0.66 | 0.261104 |
Target: 5'- cGCGCuUUGCUGCcgguuuggugGCAGguuuaCGCgUGCGCGGu -3' miRNA: 3'- -CGUG-AACGGCG----------CGUC-----GCGgACGCGCU- -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 6340 | 0.67 | 0.247797 |
Target: 5'- uCACcgGCauCGCGCAG-GCgCUGCGCGGc -3' miRNA: 3'- cGUGaaCG--GCGCGUCgCG-GACGCGCU- -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 17533 | 0.68 | 0.210658 |
Target: 5'- gGCACggguaGCCGCGCcauucucAGcCGCCUGCaGCu- -3' miRNA: 3'- -CGUGaa---CGGCGCG-------UC-GCGGACG-CGcu -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 6011 | 0.69 | 0.179397 |
Target: 5'- gGCGgUUGCaugGCGCAGCGgggcuuguuccCgCUGCGCGGc -3' miRNA: 3'- -CGUgAACGg--CGCGUCGC-----------G-GACGCGCU- -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 17049 | 0.69 | 0.179397 |
Target: 5'- ----gUGUCGCgauaccgaccccGCAGCGCCUGCuGCGGc -3' miRNA: 3'- cgugaACGGCG------------CGUCGCGGACG-CGCU- -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 16145 | 0.73 | 0.083336 |
Target: 5'- -gACUgacGCCGCGCagGGUGCCUGCGUu- -3' miRNA: 3'- cgUGAa--CGGCGCG--UCGCGGACGCGcu -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 16757 | 0.77 | 0.044784 |
Target: 5'- cGC-CUUGCCGCuucaaguGCcuGCGCCUGCGCGc -3' miRNA: 3'- -CGuGAACGGCG-------CGu-CGCGGACGCGCu -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 8478 | 0.82 | 0.018129 |
Target: 5'- uGCACUUGCCuuugcgagcuguucGCGCAGUGucaCCUGCGCGGa -3' miRNA: 3'- -CGUGAACGG--------------CGCGUCGC---GGACGCGCU- -5' |
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1284 | 5' | -60.5 | NC_001317.1 | + | 6275 | 1.1 | 0.000108 |
Target: 5'- gGCACUUGCCGCGCAGCGCCUGCGCGAu -3' miRNA: 3'- -CGUGAACGGCGCGUCGCGGACGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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