miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12840 5' -56.8 NC_003387.1 + 21315 0.66 0.627366
Target:  5'- cAGUgGCGcGUGAGCGGggcugacGGCGaCCAGUa -3'
miRNA:   3'- -UCA-CGC-CGCUUGCUau-----CCGC-GGUCAg -5'
12840 5' -56.8 NC_003387.1 + 18201 0.66 0.627366
Target:  5'- aGGUGCgccucGGCGAcgcgACGAccGGCGaCCuGGUCg -3'
miRNA:   3'- -UCACG-----CCGCU----UGCUauCCGC-GG-UCAG- -5'
12840 5' -56.8 NC_003387.1 + 42830 0.66 0.626266
Target:  5'- --gGCGGCGAggcgaucauggcgGCGAUcgAGGuCGUgCAGUCg -3'
miRNA:   3'- ucaCGCCGCU-------------UGCUA--UCC-GCG-GUCAG- -5'
12840 5' -56.8 NC_003387.1 + 5138 0.66 0.616367
Target:  5'- --cGCGaCGAgggGCGcucGGCGCCGGUCg -3'
miRNA:   3'- ucaCGCcGCU---UGCuauCCGCGGUCAG- -5'
12840 5' -56.8 NC_003387.1 + 38803 0.66 0.616367
Target:  5'- --gGCGGCGucauggugcCGAUcGGGCGCCAcccgacGUCg -3'
miRNA:   3'- ucaCGCCGCuu-------GCUA-UCCGCGGU------CAG- -5'
12840 5' -56.8 NC_003387.1 + 41332 0.66 0.616367
Target:  5'- --cGCGGCcAGCGu--GGCGCCGaUCg -3'
miRNA:   3'- ucaCGCCGcUUGCuauCCGCGGUcAG- -5'
12840 5' -56.8 NC_003387.1 + 6042 0.66 0.616367
Target:  5'- aGGUGCGGCa------GGGCGCCGGg- -3'
miRNA:   3'- -UCACGCCGcuugcuaUCCGCGGUCag -5'
12840 5' -56.8 NC_003387.1 + 38287 0.66 0.616367
Target:  5'- cGUGCGcGUGAACGAgcccAGGaaaccggGCaCAGUCu -3'
miRNA:   3'- uCACGC-CGCUUGCUa---UCCg------CG-GUCAG- -5'
12840 5' -56.8 NC_003387.1 + 48488 0.66 0.604284
Target:  5'- uGUGCGGCGccgacgcAACGAUuuuCGaCCAGUCc -3'
miRNA:   3'- uCACGCCGC-------UUGCUAuccGC-GGUCAG- -5'
12840 5' -56.8 NC_003387.1 + 46125 0.66 0.59442
Target:  5'- -cUGCGGUGGcuCGGgcgugAGGUGCCgcGGUCg -3'
miRNA:   3'- ucACGCCGCUu-GCUa----UCCGCGG--UCAG- -5'
12840 5' -56.8 NC_003387.1 + 21110 0.66 0.59442
Target:  5'- cGGUGCGGUc-ACGAauaccgAGGCggGCCAGUg -3'
miRNA:   3'- -UCACGCCGcuUGCUa-----UCCG--CGGUCAg -5'
12840 5' -56.8 NC_003387.1 + 27189 0.66 0.59442
Target:  5'- cGUGUGGUGGcGCGAgcgcaaccGGCGCaAGUCu -3'
miRNA:   3'- uCACGCCGCU-UGCUau------CCGCGgUCAG- -5'
12840 5' -56.8 NC_003387.1 + 50797 0.66 0.58349
Target:  5'- cGUcGCGGauCGGGCGuuuacGGGCGCCAG-Cg -3'
miRNA:   3'- uCA-CGCC--GCUUGCua---UCCGCGGUCaG- -5'
12840 5' -56.8 NC_003387.1 + 31927 0.66 0.582399
Target:  5'- --aGCGGUggcuaccGAGCaGAUccGCGCCGGUCg -3'
miRNA:   3'- ucaCGCCG-------CUUG-CUAucCGCGGUCAG- -5'
12840 5' -56.8 NC_003387.1 + 51137 0.66 0.569342
Target:  5'- -aUGCcagGGCGcgucugacuuucacGACGggGGGCGCCGGUa -3'
miRNA:   3'- ucACG---CCGC--------------UUGCuaUCCGCGGUCAg -5'
12840 5' -56.8 NC_003387.1 + 43304 0.67 0.561759
Target:  5'- cGGUGCugGGCGAcuacGCGAUcacaGCGCCGGg- -3'
miRNA:   3'- -UCACG--CCGCU----UGCUAuc--CGCGGUCag -5'
12840 5' -56.8 NC_003387.1 + 28522 0.67 0.540254
Target:  5'- cGGUGCGGUGcGCcgucAUAGGUGCCGcuGUUu -3'
miRNA:   3'- -UCACGCCGCuUGc---UAUCCGCGGU--CAG- -5'
12840 5' -56.8 NC_003387.1 + 28219 0.67 0.540254
Target:  5'- gGGcUGCGGCuGACGAac--CGCCGGUCg -3'
miRNA:   3'- -UC-ACGCCGcUUGCUauccGCGGUCAG- -5'
12840 5' -56.8 NC_003387.1 + 25446 0.67 0.529605
Target:  5'- cAGUGCGGCGuucuccucgcGCGAccAGGCauGCCGGg- -3'
miRNA:   3'- -UCACGCCGCu---------UGCUa-UCCG--CGGUCag -5'
12840 5' -56.8 NC_003387.1 + 45545 0.67 0.508547
Target:  5'- cGUGCGGCaaGGCGAUccGCcGCCAGcUCg -3'
miRNA:   3'- uCACGCCGc-UUGCUAucCG-CGGUC-AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.