miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12841 5' -55.4 NC_003387.1 + 2339 0.66 0.679352
Target:  5'- cGGCGGugUCGaggccgccGUCGGCGUcGAGCGCc- -3'
miRNA:   3'- -CUGCUugAGC--------CGGUCGCA-CUUGCGua -5'
12841 5' -55.4 NC_003387.1 + 795 0.66 0.679352
Target:  5'- gGACGAcCUCGGCaAGC-UGAuuuGCGCGa -3'
miRNA:   3'- -CUGCUuGAGCCGgUCGcACU---UGCGUa -5'
12841 5' -55.4 NC_003387.1 + 7327 0.66 0.668273
Target:  5'- cACGAucgGCUCGGgCGGCc-GGGCGCAg -3'
miRNA:   3'- cUGCU---UGAGCCgGUCGcaCUUGCGUa -5'
12841 5' -55.4 NC_003387.1 + 52538 0.66 0.667163
Target:  5'- -cCGAGCUggCGGCCgGGCGUcacuuucgugaccGAGCGCGa -3'
miRNA:   3'- cuGCUUGA--GCCGG-UCGCA-------------CUUGCGUa -5'
12841 5' -55.4 NC_003387.1 + 33676 0.66 0.657159
Target:  5'- cGGCGAuggucgaccucgACUCGGCgaccggCGGUGUG-ACGCAg -3'
miRNA:   3'- -CUGCU------------UGAGCCG------GUCGCACuUGCGUa -5'
12841 5' -55.4 NC_003387.1 + 29350 0.66 0.634871
Target:  5'- cGGCGAcccgaaucaGCUCGGCCAucacuugcucgcGgGUGAGCaGCGg -3'
miRNA:   3'- -CUGCU---------UGAGCCGGU------------CgCACUUG-CGUa -5'
12841 5' -55.4 NC_003387.1 + 27634 0.67 0.601445
Target:  5'- cGACGAucgCGGCCuGCGUGuucACGuCAUa -3'
miRNA:   3'- -CUGCUugaGCCGGuCGCACu--UGC-GUA- -5'
12841 5' -55.4 NC_003387.1 + 7510 0.68 0.557292
Target:  5'- uGACGAGuCUgCGGCCgAGgGUGAACGa-- -3'
miRNA:   3'- -CUGCUU-GA-GCCGG-UCgCACUUGCgua -5'
12841 5' -55.4 NC_003387.1 + 28725 0.68 0.546387
Target:  5'- cGACGGGguguuaUCGcuGCCGGUGUGAugGCAc -3'
miRNA:   3'- -CUGCUUg-----AGC--CGGUCGCACUugCGUa -5'
12841 5' -55.4 NC_003387.1 + 45765 0.68 0.546387
Target:  5'- cGACGAGggCGGCCAGCaggGUGcccucACGCAc -3'
miRNA:   3'- -CUGCUUgaGCCGGUCG---CACu----UGCGUa -5'
12841 5' -55.4 NC_003387.1 + 49244 0.68 0.53555
Target:  5'- aGCGGcuGCUCGacGCCGGgGUGAcGCGCAUc -3'
miRNA:   3'- cUGCU--UGAGC--CGGUCgCACU-UGCGUA- -5'
12841 5' -55.4 NC_003387.1 + 17503 0.68 0.523719
Target:  5'- cGCGGccguaguGCUCGGCCAGCau--GCGCAg -3'
miRNA:   3'- cUGCU-------UGAGCCGGUCGcacuUGCGUa -5'
12841 5' -55.4 NC_003387.1 + 41327 0.69 0.503526
Target:  5'- -cCGAucgCGGCCAGCGUG-GCGCc- -3'
miRNA:   3'- cuGCUugaGCCGGUCGCACuUGCGua -5'
12841 5' -55.4 NC_003387.1 + 51395 0.69 0.482645
Target:  5'- -uCGGAUUCGGCCGGUGaccggcGAGCGCc- -3'
miRNA:   3'- cuGCUUGAGCCGGUCGCa-----CUUGCGua -5'
12841 5' -55.4 NC_003387.1 + 19456 0.69 0.46219
Target:  5'- uGCGGGCgCGuGUCAGUGUGGGCGCc- -3'
miRNA:   3'- cUGCUUGaGC-CGGUCGCACUUGCGua -5'
12841 5' -55.4 NC_003387.1 + 28229 0.7 0.452136
Target:  5'- uGACGAACcgcCGGUCGGCcaGGACGCGc -3'
miRNA:   3'- -CUGCUUGa--GCCGGUCGcaCUUGCGUa -5'
12841 5' -55.4 NC_003387.1 + 41828 0.7 0.452136
Target:  5'- cGACGAGCugagcauccuggUCGGCCAGCGgccGACgGCGg -3'
miRNA:   3'- -CUGCUUG------------AGCCGGUCGCac-UUG-CGUa -5'
12841 5' -55.4 NC_003387.1 + 37249 0.7 0.416964
Target:  5'- cGACGAGCugaacgugUCGGCCcGCGUGGcggucaaggcgccugGCGCGc -3'
miRNA:   3'- -CUGCUUG--------AGCCGGuCGCACU---------------UGCGUa -5'
12841 5' -55.4 NC_003387.1 + 26841 0.71 0.376326
Target:  5'- gGGCcuGCUCGGCgAGCuGUGGAUGCAc -3'
miRNA:   3'- -CUGcuUGAGCCGgUCG-CACUUGCGUa -5'
12841 5' -55.4 NC_003387.1 + 807 0.72 0.325376
Target:  5'- cGAUGAugUCGGCCAGCucGGGCaGCAc -3'
miRNA:   3'- -CUGCUugAGCCGGUCGcaCUUG-CGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.