Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12842 | 3' | -56.4 | NC_003387.1 | + | 45161 | 0.69 | 0.445258 |
Target: 5'- aGGUGGuCGCGUgaGCAGGcaccGGCaagaGGAUCGGg -3' miRNA: 3'- -UCGUC-GCGCA--UGUCCa---CCG----UCUAGCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 37816 | 0.71 | 0.345863 |
Target: 5'- cAGCAGCGCGcgauCGGGccGaGCgAGGUCGGg -3' miRNA: 3'- -UCGUCGCGCau--GUCCa-C-CG-UCUAGCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 39698 | 0.91 | 0.014063 |
Target: 5'- cGCAGCGCGUGCAGcagcGGCAGAUCGGg -3' miRNA: 3'- uCGUCGCGCAUGUCca--CCGUCUAGCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 12915 | 0.66 | 0.64602 |
Target: 5'- uGGgGGUGCcUAguGGUGGCucGUCGGc -3' miRNA: 3'- -UCgUCGCGcAUguCCACCGucUAGCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 12023 | 0.67 | 0.558715 |
Target: 5'- -aCGGCGCaUGCGGuGUGGCAGGgcaUCGu -3' miRNA: 3'- ucGUCGCGcAUGUC-CACCGUCU---AGCc -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 10988 | 0.68 | 0.526708 |
Target: 5'- cGGCGGCGCcgcaaaggGUAUGGGcGGCAGuuucGUUGGc -3' miRNA: 3'- -UCGUCGCG--------CAUGUCCaCCGUC----UAGCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 50407 | 0.66 | 0.656977 |
Target: 5'- gAGCuGUaCGU-CGGGcGGCAGAUCGu -3' miRNA: 3'- -UCGuCGcGCAuGUCCaCCGUCUAGCc -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 24974 | 0.66 | 0.64602 |
Target: 5'- uGGCAGCucgGCaUGCAGGggGaGCAGGUCa- -3' miRNA: 3'- -UCGUCG---CGcAUGUCCa-C-CGUCUAGcc -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 41784 | 0.67 | 0.56951 |
Target: 5'- aAGCcgGGCGCGUGCcgcgaccuGGcgcacgccUGGCAGAUCa- -3' miRNA: 3'- -UCG--UCGCGCAUGu-------CC--------ACCGUCUAGcc -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 24849 | 0.68 | 0.525653 |
Target: 5'- uGCGGcCGgGUGCGuGGUGGCuGGcucgaccUCGGg -3' miRNA: 3'- uCGUC-GCgCAUGU-CCACCGuCU-------AGCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 22158 | 0.69 | 0.463993 |
Target: 5'- cGGCGGCacgcucaGCGgcccagGCGGGggcGGCGGuAUCGGg -3' miRNA: 3'- -UCGUCG-------CGCa-----UGUCCa--CCGUC-UAGCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 21607 | 0.68 | 0.505756 |
Target: 5'- cGCGGCGC-UGCuGGU-GCAcauGAUCGGg -3' miRNA: 3'- uCGUCGCGcAUGuCCAcCGU---CUAGCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 21214 | 0.66 | 0.64602 |
Target: 5'- cGUGGaacaGCGUGCGGGcgcagGGCGauccGGUCGGc -3' miRNA: 3'- uCGUCg---CGCAUGUCCa----CCGU----CUAGCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 2955 | 0.71 | 0.371341 |
Target: 5'- cGCAGCGCGUgaucaGCGGGUggaccGGCAGcaaGGc -3' miRNA: 3'- uCGUCGCGCA-----UGUCCA-----CCGUCuagCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 44606 | 0.78 | 0.120789 |
Target: 5'- cAGCAGCGCGUACGagcuGGgcucgcccucgGGCGGGUUGGc -3' miRNA: 3'- -UCGUCGCGCAUGU----CCa----------CCGUCUAGCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 45238 | 0.77 | 0.150767 |
Target: 5'- -cCAGCGgGUGCGGGUGcGCGGcUCGGu -3' miRNA: 3'- ucGUCGCgCAUGUCCAC-CGUCuAGCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 27922 | 0.72 | 0.291398 |
Target: 5'- cGGCGGCGUGggcgccuCGGGgggGGCucGGUCGGg -3' miRNA: 3'- -UCGUCGCGCau-----GUCCa--CCGu-CUAGCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 13897 | 0.71 | 0.371341 |
Target: 5'- gGGCAGguuCGaCGU-CGGGUGGCGcccGAUCGGc -3' miRNA: 3'- -UCGUC---GC-GCAuGUCCACCGU---CUAGCC- -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 8282 | 0.66 | 0.64602 |
Target: 5'- cGCAGCGCcucGUGCGcgucGGcgGGCAGcAUCGc -3' miRNA: 3'- uCGUCGCG---CAUGU----CCa-CCGUC-UAGCc -5' |
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12842 | 3' | -56.4 | NC_003387.1 | + | 24820 | 0.67 | 0.547978 |
Target: 5'- cAGCAGCucgGCGUACucGGGcGGCuGGcCGGg -3' miRNA: 3'- -UCGUCG---CGCAUG--UCCaCCGuCUaGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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