miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12842 5' -65.2 NC_003387.1 + 46899 0.68 0.176276
Target:  5'- ---aGGCCGccCCGCCUUGcgCGGGGUUg -3'
miRNA:   3'- uaggCCGGCu-GGCGGAGCa-GCCCCGA- -5'
12842 5' -65.2 NC_003387.1 + 22494 0.68 0.176276
Target:  5'- -aCCGGgCGACgGCCUCGgCGGcGCg -3'
miRNA:   3'- uaGGCCgGCUGgCGGAGCaGCCcCGa -5'
12842 5' -65.2 NC_003387.1 + 11005 0.68 0.171387
Target:  5'- -cUCGGCCGugccccgGCCGCCuUCGUCGGcGCc -3'
miRNA:   3'- uaGGCCGGC-------UGGCGG-AGCAGCCcCGa -5'
12842 5' -65.2 NC_003387.1 + 49485 0.69 0.167049
Target:  5'- uUUCGGCCGGugcgcCCGCCcggCGUCgacgugucgcaauGGGGCUg -3'
miRNA:   3'- uAGGCCGGCU-----GGCGGa--GCAG-------------CCCCGA- -5'
12842 5' -65.2 NC_003387.1 + 11481 0.69 0.163228
Target:  5'- uUCaUGGCCGACaauGCCUCGUgGGcGGUg -3'
miRNA:   3'- uAG-GCCGGCUGg--CGGAGCAgCC-CCGa -5'
12842 5' -65.2 NC_003387.1 + 31013 0.69 0.163228
Target:  5'- gAUCgGGCCGAgCGUg-CGcCGGGGCg -3'
miRNA:   3'- -UAGgCCGGCUgGCGgaGCaGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 27920 0.69 0.159076
Target:  5'- -aCCGGCggcgUGGgCGCCUCGgggggggcucggUCGGGGCg -3'
miRNA:   3'- uaGGCCG----GCUgGCGGAGC------------AGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 22170 0.69 0.155019
Target:  5'- -aCCGGCCGcggcgGCgGuCCaUGUCGGGGCg -3'
miRNA:   3'- uaGGCCGGC-----UGgC-GGaGCAGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 15610 0.69 0.151056
Target:  5'- -cCCGGCCGA-CGUCgagcaCGUCGaGGGCg -3'
miRNA:   3'- uaGGCCGGCUgGCGGa----GCAGC-CCCGa -5'
12842 5' -65.2 NC_003387.1 + 49432 0.69 0.147185
Target:  5'- -cCCGaGUCGGCgGCCgUGUCGGGGUc -3'
miRNA:   3'- uaGGC-CGGCUGgCGGaGCAGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 8521 0.7 0.139714
Target:  5'- cUCgGGCCGACCGgCUCG-CGGGuaGUUa -3'
miRNA:   3'- uAGgCCGGCUGGCgGAGCaGCCC--CGA- -5'
12842 5' -65.2 NC_003387.1 + 6962 0.7 0.139714
Target:  5'- -cCCuGCUGGCCGcCCUCGUCGaGGGg- -3'
miRNA:   3'- uaGGcCGGCUGGC-GGAGCAGC-CCCga -5'
12842 5' -65.2 NC_003387.1 + 20350 0.7 0.139713
Target:  5'- -gUCGGCCagcccCCGCCUCGUgCGGGGg- -3'
miRNA:   3'- uaGGCCGGcu---GGCGGAGCA-GCCCCga -5'
12842 5' -65.2 NC_003387.1 + 3096 0.7 0.136109
Target:  5'- -gCUcGCCGACCGgCUCGuaaaUCGGGGCc -3'
miRNA:   3'- uaGGcCGGCUGGCgGAGC----AGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 44842 0.7 0.136109
Target:  5'- aGUgCGGCCGACCucaaggucgguGCCguagcCGUCGgGGGCg -3'
miRNA:   3'- -UAgGCCGGCUGG-----------CGGa----GCAGC-CCCGa -5'
12842 5' -65.2 NC_003387.1 + 23840 0.71 0.110225
Target:  5'- -cCCGcGCCuaaGCCGCCgcaGUCGGGGCc -3'
miRNA:   3'- uaGGC-CGGc--UGGCGGag-CAGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 34258 0.71 0.104513
Target:  5'- -aCCGGCUGAUCGCCgaGUCGGGcGUc -3'
miRNA:   3'- uaGGCCGGCUGGCGGagCAGCCC-CGa -5'
12842 5' -65.2 NC_003387.1 + 32246 0.72 0.086645
Target:  5'- -gCUGGCCGACCGCCUggcCGUCGccgaGGCc -3'
miRNA:   3'- uaGGCCGGCUGGCGGA---GCAGCc---CCGa -5'
12842 5' -65.2 NC_003387.1 + 51740 0.76 0.048921
Target:  5'- -cCCGGUCGAgCGCCUCGgCGGcGGCa -3'
miRNA:   3'- uaGGCCGGCUgGCGGAGCaGCC-CCGa -5'
12842 5' -65.2 NC_003387.1 + 17093 0.76 0.045047
Target:  5'- -cCCGcCCGGCCGCCUCGgcgggcuccUCGGGGCc -3'
miRNA:   3'- uaGGCcGGCUGGCGGAGC---------AGCCCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.