miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12843 5' -57.2 NC_003387.1 + 28415 0.67 0.498801
Target:  5'- ---cGAGCAgacCCGgCUGCUGCG-GCGg -3'
miRNA:   3'- aauaCUCGU---GGCgGACGACGUgCGCg -5'
12843 5' -57.2 NC_003387.1 + 23885 0.67 0.498801
Target:  5'- gUGUG-GCugGCCGaCgUGCUGCGCGC-Cg -3'
miRNA:   3'- aAUACuCG--UGGC-GgACGACGUGCGcG- -5'
12843 5' -57.2 NC_003387.1 + 3936 0.67 0.498801
Target:  5'- -gGUGGGCGCUG-CUGCagaacgacccggUGguCGCGCu -3'
miRNA:   3'- aaUACUCGUGGCgGACG------------ACguGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 19927 0.67 0.498801
Target:  5'- --uUGAGCugCGCCaggucgacccgGCgGUACGCGg -3'
miRNA:   3'- aauACUCGugGCGGa----------CGaCGUGCGCg -5'
12843 5' -57.2 NC_003387.1 + 21426 0.67 0.498801
Target:  5'- -aGUGGGUagACCGCUcaaGCUGCGCgagauauuagagGCGCu -3'
miRNA:   3'- aaUACUCG--UGGCGGa--CGACGUG------------CGCG- -5'
12843 5' -57.2 NC_003387.1 + 41182 0.67 0.498801
Target:  5'- -aGUcAGCACgGCCUGgUGCGCGaacaggGCg -3'
miRNA:   3'- aaUAcUCGUGgCGGACgACGUGCg-----CG- -5'
12843 5' -57.2 NC_003387.1 + 34499 0.67 0.488376
Target:  5'- ---cGAGUAcgcCCGCC-GCUGCG-GCGCc -3'
miRNA:   3'- aauaCUCGU---GGCGGaCGACGUgCGCG- -5'
12843 5' -57.2 NC_003387.1 + 50397 0.67 0.488376
Target:  5'- ---cGA-CACCGCCgaGCUGUACGUcggGCg -3'
miRNA:   3'- aauaCUcGUGGCGGa-CGACGUGCG---CG- -5'
12843 5' -57.2 NC_003387.1 + 43770 0.67 0.488376
Target:  5'- -gAUGAGCACCuUCaUGCggGCGcCGUGCa -3'
miRNA:   3'- aaUACUCGUGGcGG-ACGa-CGU-GCGCG- -5'
12843 5' -57.2 NC_003387.1 + 25387 0.67 0.478056
Target:  5'- ---gGGGCugCGgCUGCUcgacgagaagGCGCGCGa -3'
miRNA:   3'- aauaCUCGugGCgGACGA----------CGUGCGCg -5'
12843 5' -57.2 NC_003387.1 + 22348 0.67 0.478056
Target:  5'- -cGUGAuGCGCaGCgaGCUGCAgGCGg -3'
miRNA:   3'- aaUACU-CGUGgCGgaCGACGUgCGCg -5'
12843 5' -57.2 NC_003387.1 + 18837 0.67 0.478056
Target:  5'- ---cGGGuCGCCGCCcaUG-UGCAUGUGCa -3'
miRNA:   3'- aauaCUC-GUGGCGG--ACgACGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 9806 0.67 0.478056
Target:  5'- ---cGAGCgACCGgC-GCUGCAggcUGCGCa -3'
miRNA:   3'- aauaCUCG-UGGCgGaCGACGU---GCGCG- -5'
12843 5' -57.2 NC_003387.1 + 6434 0.67 0.478056
Target:  5'- -----uGCGCCGCCUGCUcggccuccCACGUGUc -3'
miRNA:   3'- aauacuCGUGGCGGACGAc-------GUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 24836 0.67 0.467844
Target:  5'- -cGUGuGCGCUGUCUGCgGcCGgGUGCg -3'
miRNA:   3'- aaUACuCGUGGCGGACGaC-GUgCGCG- -5'
12843 5' -57.2 NC_003387.1 + 32297 0.67 0.467844
Target:  5'- ---gGAGCACCGgCgGCUGCACa--- -3'
miRNA:   3'- aauaCUCGUGGCgGaCGACGUGcgcg -5'
12843 5' -57.2 NC_003387.1 + 28872 0.67 0.467844
Target:  5'- ----uGGUACCGCgaGCgGCACgGCGCc -3'
miRNA:   3'- aauacUCGUGGCGgaCGaCGUG-CGCG- -5'
12843 5' -57.2 NC_003387.1 + 4916 0.67 0.457745
Target:  5'- gUAgcuGCACUGCCcgGCgcgGCGuCGCGCg -3'
miRNA:   3'- aAUacuCGUGGCGGa-CGa--CGU-GCGCG- -5'
12843 5' -57.2 NC_003387.1 + 36170 0.67 0.457745
Target:  5'- -gAUGcuCACCGCCccgaucUGCcaccUGUACGCGCu -3'
miRNA:   3'- aaUACucGUGGCGG------ACG----ACGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 24638 0.67 0.457745
Target:  5'- ---cGAcGCACCucgcCCUGCUGCGCGagguCGCc -3'
miRNA:   3'- aauaCU-CGUGGc---GGACGACGUGC----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.