miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12844 3' -59.5 NC_003387.1 + 18289 0.66 0.490784
Target:  5'- cUCGaCCAGCGccgaccCGGCCG-CGGCGGUg -3'
miRNA:   3'- -GGC-GGUCGUacc---GUUGGCaGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 31362 0.66 0.490784
Target:  5'- gCaCCGGCcagGGCAG-CGUCGGCuGCa -3'
miRNA:   3'- gGcGGUCGua-CCGUUgGCAGCCGcCG- -5'
12844 3' -59.5 NC_003387.1 + 6377 0.66 0.490784
Target:  5'- uCgGCC-GCG-GGCGACgccuugCGUgGGCGGCc -3'
miRNA:   3'- -GgCGGuCGUaCCGUUG------GCAgCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 27146 0.66 0.490784
Target:  5'- cCCGCCGGgGUcGGCG-CCGcCGG-GGa -3'
miRNA:   3'- -GGCGGUCgUA-CCGUuGGCaGCCgCCg -5'
12844 3' -59.5 NC_003387.1 + 20361 0.66 0.490784
Target:  5'- cCCGCCucguGCGggGGUugugUCGUUuaGGCGGCg -3'
miRNA:   3'- -GGCGGu---CGUa-CCGuu--GGCAG--CCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 50485 0.66 0.489789
Target:  5'- gUCGUCGGCAacUGGCugacgcuGGCCGccugacCGGCGaGCa -3'
miRNA:   3'- -GGCGGUCGU--ACCG-------UUGGCa-----GCCGC-CG- -5'
12844 3' -59.5 NC_003387.1 + 4346 0.66 0.489789
Target:  5'- cCCGCUuGCgaauGUGGUugcccuuGGCgCGcUCGGCGGCc -3'
miRNA:   3'- -GGCGGuCG----UACCG-------UUG-GC-AGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 20369 0.66 0.480871
Target:  5'- cUCGCCuugaaGGCGGgCGUgGGCGGUa -3'
miRNA:   3'- -GGCGGucguaCCGUUgGCAgCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 5801 0.66 0.480871
Target:  5'- gCCGCCcGCAccaccgaaGcGCAACCccgcgcaaggCGGCGGCg -3'
miRNA:   3'- -GGCGGuCGUa-------C-CGUUGGca--------GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 40280 0.66 0.480871
Target:  5'- gCCGCCAGCG----AACC-UCGGCaGCg -3'
miRNA:   3'- -GGCGGUCGUaccgUUGGcAGCCGcCG- -5'
12844 3' -59.5 NC_003387.1 + 34446 0.66 0.480871
Target:  5'- aCG-CAGCcgGGCcugccgaagugGAUCGUCgacauGGCGGCg -3'
miRNA:   3'- gGCgGUCGuaCCG-----------UUGGCAG-----CCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 3534 0.66 0.477916
Target:  5'- cCCGCCGccGCcccaGGCGGCUGcUCaggcgcucaacgagGGCGGCg -3'
miRNA:   3'- -GGCGGU--CGua--CCGUUGGC-AG--------------CCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 51170 0.66 0.471056
Target:  5'- gCGCCGGUAugcacguacgccUGGCGAUCcUCGGCaccgaGGUg -3'
miRNA:   3'- gGCGGUCGU------------ACCGUUGGcAGCCG-----CCG- -5'
12844 3' -59.5 NC_003387.1 + 15638 0.66 0.471056
Target:  5'- gCGCaCGGCGaGGuCGACCauGUCGGCGa- -3'
miRNA:   3'- gGCG-GUCGUaCC-GUUGG--CAGCCGCcg -5'
12844 3' -59.5 NC_003387.1 + 28083 0.66 0.471056
Target:  5'- cUCGCgCAGCAgGGCgagGugCGUCGGgucgcccaGGCg -3'
miRNA:   3'- -GGCG-GUCGUaCCG---UugGCAGCCg-------CCG- -5'
12844 3' -59.5 NC_003387.1 + 3832 0.66 0.471056
Target:  5'- aUCGUCAG---GGCGGCgCGguaGGCGGCg -3'
miRNA:   3'- -GGCGGUCguaCCGUUG-GCag-CCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 48082 0.66 0.471056
Target:  5'- gCGCCucgacGgGUGGCGcuGCCGcugcgcccgCGGUGGCu -3'
miRNA:   3'- gGCGGu----CgUACCGU--UGGCa--------GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 7808 0.67 0.465216
Target:  5'- gCC-CCAGCccGGCGACgCGaUacggauaugcgcgccCGGCGGCu -3'
miRNA:   3'- -GGcGGUCGuaCCGUUG-GC-A---------------GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 45806 0.67 0.465216
Target:  5'- aCCGCCcccgucaaGGCGUGGCGauagcgcacuaggcaGCCGgugccaCGaCGGCg -3'
miRNA:   3'- -GGCGG--------UCGUACCGU---------------UGGCa-----GCcGCCG- -5'
12844 3' -59.5 NC_003387.1 + 35771 0.67 0.461344
Target:  5'- aCGCCAGCAccgggaucaGGUAccgaaCGUCGuaGCGGCg -3'
miRNA:   3'- gGCGGUCGUa--------CCGUug---GCAGC--CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.