miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12844 5' -49.5 NC_003387.1 + 15312 1.09 0.004135
Target:  5'- uUGGUCGCCAUCGCGACGUUGAAAAUGc -3'
miRNA:   3'- -ACCAGCGGUAGCGCUGCAACUUUUAC- -5'
12844 5' -49.5 NC_003387.1 + 6882 0.73 0.623559
Target:  5'- cGGUCGCCGUCGUGGCa--------- -3'
miRNA:   3'- aCCAGCGGUAGCGCUGcaacuuuuac -5'
12844 5' -49.5 NC_003387.1 + 52265 0.72 0.713566
Target:  5'- cGGUCGCCGUCggccgccGCGGCGgcGAc---- -3'
miRNA:   3'- aCCAGCGGUAG-------CGCUGCaaCUuuuac -5'
12844 5' -49.5 NC_003387.1 + 10219 0.71 0.725807
Target:  5'- cGGUCGCCcagGCGaauGCGUUGggGAUc -3'
miRNA:   3'- aCCAGCGGuagCGC---UGCAACuuUUAc -5'
12844 5' -49.5 NC_003387.1 + 12308 0.71 0.769156
Target:  5'- cGGuUCGCCGUCGCcGACGUaGGu---- -3'
miRNA:   3'- aCC-AGCGGUAGCG-CUGCAaCUuuuac -5'
12844 5' -49.5 NC_003387.1 + 52224 0.71 0.769156
Target:  5'- cGGUCGCCAcgcgggcgcgcaUCGCGACGa-------- -3'
miRNA:   3'- aCCAGCGGU------------AGCGCUGCaacuuuuac -5'
12844 5' -49.5 NC_003387.1 + 40362 0.7 0.789961
Target:  5'- cGG--GCCGUCGCGgcgGCGUUGguGAUGa -3'
miRNA:   3'- aCCagCGGUAGCGC---UGCAACuuUUAC- -5'
12844 5' -49.5 NC_003387.1 + 40946 0.7 0.81005
Target:  5'- cUGGUCGCCAaggugCGCGACGcgaucGAGGc-- -3'
miRNA:   3'- -ACCAGCGGUa----GCGCUGCaa---CUUUuac -5'
12844 5' -49.5 NC_003387.1 + 24235 0.69 0.829326
Target:  5'- gUGGUUGCCGcCGaCGACGUcGAGcuUGa -3'
miRNA:   3'- -ACCAGCGGUaGC-GCUGCAaCUUuuAC- -5'
12844 5' -49.5 NC_003387.1 + 45150 0.69 0.838631
Target:  5'- gGGUCGCCAUCGUGuACucagUGAu---- -3'
miRNA:   3'- aCCAGCGGUAGCGC-UGca--ACUuuuac -5'
12844 5' -49.5 NC_003387.1 + 41069 0.69 0.8477
Target:  5'- gGGUUagcgGUCAgCGCGACGUUGAAu--- -3'
miRNA:   3'- aCCAG----CGGUaGCGCUGCAACUUuuac -5'
12844 5' -49.5 NC_003387.1 + 43257 0.69 0.856522
Target:  5'- gGGUCGaaAUCGuCGGCGUcGAAcGUGg -3'
miRNA:   3'- aCCAGCggUAGC-GCUGCAaCUUuUAC- -5'
12844 5' -49.5 NC_003387.1 + 26490 0.69 0.865089
Target:  5'- cGGcgaUCGCCGggGCGACGcUGuGAAUGa -3'
miRNA:   3'- aCC---AGCGGUagCGCUGCaACuUUUAC- -5'
12844 5' -49.5 NC_003387.1 + 48396 0.68 0.881423
Target:  5'- cUGGUgCGCCuUCuCGGCGUUGAGc--- -3'
miRNA:   3'- -ACCA-GCGGuAGcGCUGCAACUUuuac -5'
12844 5' -49.5 NC_003387.1 + 12232 0.67 0.917287
Target:  5'- cGGUCGCCAgcgcaGCGGCGcucggcUUGAu---- -3'
miRNA:   3'- aCCAGCGGUag---CGCUGC------AACUuuuac -5'
12844 5' -49.5 NC_003387.1 + 10518 0.67 0.923572
Target:  5'- cGGUCGCCGuccugcUCGCGcacgcccgccuCGUUGAGGc-- -3'
miRNA:   3'- aCCAGCGGU------AGCGCu----------GCAACUUUuac -5'
12844 5' -49.5 NC_003387.1 + 34512 0.67 0.929556
Target:  5'- aGGUCGCCGgucgUCGCGuCGccGAGGc-- -3'
miRNA:   3'- aCCAGCGGU----AGCGCuGCaaCUUUuac -5'
12844 5' -49.5 NC_003387.1 + 27521 0.67 0.929557
Target:  5'- cGGcCGCCGcCGCGAgGUUGccuguAUGa -3'
miRNA:   3'- aCCaGCGGUaGCGCUgCAACuuu--UAC- -5'
12844 5' -49.5 NC_003387.1 + 33991 0.67 0.93524
Target:  5'- gGGUCGCgGUCGaCGACGa-------- -3'
miRNA:   3'- aCCAGCGgUAGC-GCUGCaacuuuuac -5'
12844 5' -49.5 NC_003387.1 + 15254 0.66 0.945709
Target:  5'- cGGUCGCCGccgagaagUCGguCGACGccgaGGAGAUGu -3'
miRNA:   3'- aCCAGCGGU--------AGC--GCUGCaa--CUUUUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.