miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12844 5' -49.5 NC_003387.1 + 43257 0.69 0.856522
Target:  5'- gGGUCGaaAUCGuCGGCGUcGAAcGUGg -3'
miRNA:   3'- aCCAGCggUAGC-GCUGCAaCUUuUAC- -5'
12844 5' -49.5 NC_003387.1 + 41069 0.69 0.8477
Target:  5'- gGGUUagcgGUCAgCGCGACGUUGAAu--- -3'
miRNA:   3'- aCCAG----CGGUaGCGCUGCAACUUuuac -5'
12844 5' -49.5 NC_003387.1 + 45150 0.69 0.838631
Target:  5'- gGGUCGCCAUCGUGuACucagUGAu---- -3'
miRNA:   3'- aCCAGCGGUAGCGC-UGca--ACUuuuac -5'
12844 5' -49.5 NC_003387.1 + 24235 0.69 0.829326
Target:  5'- gUGGUUGCCGcCGaCGACGUcGAGcuUGa -3'
miRNA:   3'- -ACCAGCGGUaGC-GCUGCAaCUUuuAC- -5'
12844 5' -49.5 NC_003387.1 + 40946 0.7 0.81005
Target:  5'- cUGGUCGCCAaggugCGCGACGcgaucGAGGc-- -3'
miRNA:   3'- -ACCAGCGGUa----GCGCUGCaa---CUUUuac -5'
12844 5' -49.5 NC_003387.1 + 40362 0.7 0.789961
Target:  5'- cGG--GCCGUCGCGgcgGCGUUGguGAUGa -3'
miRNA:   3'- aCCagCGGUAGCGC---UGCAACuuUUAC- -5'
12844 5' -49.5 NC_003387.1 + 12308 0.71 0.769156
Target:  5'- cGGuUCGCCGUCGCcGACGUaGGu---- -3'
miRNA:   3'- aCC-AGCGGUAGCG-CUGCAaCUuuuac -5'
12844 5' -49.5 NC_003387.1 + 52224 0.71 0.769156
Target:  5'- cGGUCGCCAcgcgggcgcgcaUCGCGACGa-------- -3'
miRNA:   3'- aCCAGCGGU------------AGCGCUGCaacuuuuac -5'
12844 5' -49.5 NC_003387.1 + 10219 0.71 0.725807
Target:  5'- cGGUCGCCcagGCGaauGCGUUGggGAUc -3'
miRNA:   3'- aCCAGCGGuagCGC---UGCAACuuUUAc -5'
12844 5' -49.5 NC_003387.1 + 52265 0.72 0.713566
Target:  5'- cGGUCGCCGUCggccgccGCGGCGgcGAc---- -3'
miRNA:   3'- aCCAGCGGUAG-------CGCUGCaaCUuuuac -5'
12844 5' -49.5 NC_003387.1 + 6882 0.73 0.623559
Target:  5'- cGGUCGCCGUCGUGGCa--------- -3'
miRNA:   3'- aCCAGCGGUAGCGCUGcaacuuuuac -5'
12844 5' -49.5 NC_003387.1 + 15312 1.09 0.004135
Target:  5'- uUGGUCGCCAUCGCGACGUUGAAAAUGc -3'
miRNA:   3'- -ACCAGCGGUAGCGCUGCAACUUUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.