miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12845 3' -62.7 NC_003387.1 + 29709 0.66 0.356455
Target:  5'- aCUGCUGCGucgaGCCggugauGCGGGccuUGCcgucgucgGCGCCg -3'
miRNA:   3'- -GACGACGC----UGG------CGCCC---ACGa-------CGCGGg -5'
12845 3' -62.7 NC_003387.1 + 32609 0.66 0.356455
Target:  5'- cCUGCUcGgGcucGCCGCGGGggcGCUGa-CCCu -3'
miRNA:   3'- -GACGA-CgC---UGGCGCCCa--CGACgcGGG- -5'
12845 3' -62.7 NC_003387.1 + 4277 0.66 0.356455
Target:  5'- -cGCggGCGauggagGCCGCGGGcgaGCaGCGCaCCg -3'
miRNA:   3'- gaCGa-CGC------UGGCGCCCa--CGaCGCG-GG- -5'
12845 3' -62.7 NC_003387.1 + 34029 0.66 0.351602
Target:  5'- gCUGC-GCGAcCCGCaccuggucggcguguGGGgcgGCcuaaGCGCCCa -3'
miRNA:   3'- -GACGaCGCU-GGCG---------------CCCa--CGa---CGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 36624 0.66 0.348393
Target:  5'- gCUGCUgGCcGCCGCGa-UGCccgacgGCGCCCc -3'
miRNA:   3'- -GACGA-CGcUGGCGCccACGa-----CGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 27531 0.66 0.348393
Target:  5'- aUGC-GCuGCCGCGGcG-GCgGCGCCg -3'
miRNA:   3'- gACGaCGcUGGCGCC-CaCGaCGCGGg -5'
12845 3' -62.7 NC_003387.1 + 28139 0.66 0.348393
Target:  5'- aCUGC-GCGugauugagGCCGUcGGUGUUGaGCCCg -3'
miRNA:   3'- -GACGaCGC--------UGGCGcCCACGACgCGGG- -5'
12845 3' -62.7 NC_003387.1 + 48211 0.66 0.346
Target:  5'- -gGCgGCGGCCGaGGugacccgcacgaucGUGUcGCGCCCg -3'
miRNA:   3'- gaCGaCGCUGGCgCC--------------CACGaCGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 41752 0.66 0.340463
Target:  5'- -gGCUG--GCCGCGGuGUGgUGCGaCCUc -3'
miRNA:   3'- gaCGACgcUGGCGCC-CACgACGC-GGG- -5'
12845 3' -62.7 NC_003387.1 + 18296 0.66 0.340463
Target:  5'- -aGCgccgaccCGGCCGCGGcG-GUgGCGCCCg -3'
miRNA:   3'- gaCGac-----GCUGGCGCC-CaCGaCGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 16966 0.66 0.332663
Target:  5'- gUGCUgGCGuuucaccuGgCGCGGGcggGCUGCGUCa -3'
miRNA:   3'- gACGA-CGC--------UgGCGCCCa--CGACGCGGg -5'
12845 3' -62.7 NC_003387.1 + 31251 0.66 0.332663
Target:  5'- -gGCc-CGACCgGCGcGG-GCUGCGCCa -3'
miRNA:   3'- gaCGacGCUGG-CGC-CCaCGACGCGGg -5'
12845 3' -62.7 NC_003387.1 + 7203 0.66 0.332663
Target:  5'- -gGCgucaaugGUGGCCGC-GGUGCUGa-CCCg -3'
miRNA:   3'- gaCGa------CGCUGGCGcCCACGACgcGGG- -5'
12845 3' -62.7 NC_003387.1 + 4036 0.66 0.332663
Target:  5'- -cGCgaggGCGugCgGUGGGUGCgauaCGCCUc -3'
miRNA:   3'- gaCGa---CGCugG-CGCCCACGac--GCGGG- -5'
12845 3' -62.7 NC_003387.1 + 30875 0.66 0.332663
Target:  5'- aCUGUUGCGGuaGCGGG-GCcauCGCCg -3'
miRNA:   3'- -GACGACGCUggCGCCCaCGac-GCGGg -5'
12845 3' -62.7 NC_003387.1 + 51211 0.66 0.331891
Target:  5'- gUGCUGagccugcacguCGGCCGCGgccuGGUGCUcgacgucGaCGCCCu -3'
miRNA:   3'- gACGAC-----------GCUGGCGC----CCACGA-------C-GCGGG- -5'
12845 3' -62.7 NC_003387.1 + 3335 0.66 0.331891
Target:  5'- cCUGCgcaGCGugCGCaguguGGUGCucaaggaUGCGCaCCa -3'
miRNA:   3'- -GACGa--CGCugGCGc----CCACG-------ACGCG-GG- -5'
12845 3' -62.7 NC_003387.1 + 8779 0.66 0.328047
Target:  5'- -cGCcgUGCGGCgGCGGGcgaccugauucccgcUcaGCUcGCGCCCg -3'
miRNA:   3'- gaCG--ACGCUGgCGCCC---------------A--CGA-CGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 22173 0.66 0.324996
Target:  5'- -gGCcGCGGCgGCGGuccaUGUcgggGCGCCCg -3'
miRNA:   3'- gaCGaCGCUGgCGCCc---ACGa---CGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 12457 0.66 0.317462
Target:  5'- -cGCUGgcggcggccUGGCCGCGGGccugGCGUCCg -3'
miRNA:   3'- gaCGAC---------GCUGGCGCCCacgaCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.