miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12845 3' -62.7 NC_003387.1 + 12711 0.66 0.317461
Target:  5'- -cGCgaGCGcCCGCGGG-GCUcuagGUGCCg -3'
miRNA:   3'- gaCGa-CGCuGGCGCCCaCGA----CGCGGg -5'
12845 3' -62.7 NC_003387.1 + 45354 0.66 0.315227
Target:  5'- -aGCUcagGCGACgCGCucgaguuuuugccgGcGGUuaGCUGCGCCCg -3'
miRNA:   3'- gaCGA---CGCUG-GCG--------------C-CCA--CGACGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 22951 0.66 0.310059
Target:  5'- -cGCaGCuGACCGCGuGGg---GCGCCCc -3'
miRNA:   3'- gaCGaCG-CUGGCGC-CCacgaCGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 37758 0.66 0.310059
Target:  5'- gCUGCUcgGCGACCucaaGGGcgUGCUcaagcGCGCCUg -3'
miRNA:   3'- -GACGA--CGCUGGcg--CCC--ACGA-----CGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 40499 0.67 0.30568
Target:  5'- gCUGCgcugGCGACCGCcGGUGgCccgGCaccgagcagcgaccuGCCCg -3'
miRNA:   3'- -GACGa---CGCUGGCGcCCAC-Ga--CG---------------CGGG- -5'
12845 3' -62.7 NC_003387.1 + 28886 0.67 0.302788
Target:  5'- aCUGCgGCGGCuuaggCGCGGGcGCcggGCcaccGCCCg -3'
miRNA:   3'- -GACGaCGCUG-----GCGCCCaCGa--CG----CGGG- -5'
12845 3' -62.7 NC_003387.1 + 21935 0.67 0.295649
Target:  5'- gUGCU-CGGCgGCGGGggcgGCggcagGCGUCUg -3'
miRNA:   3'- gACGAcGCUGgCGCCCa---CGa----CGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 37353 0.67 0.288642
Target:  5'- -gGCUGCGcuaucugcggcACCuGuCGGGcgGCgGCGCCCc -3'
miRNA:   3'- gaCGACGC-----------UGG-C-GCCCa-CGaCGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 1938 0.67 0.281767
Target:  5'- gUGCaGCGcaugauccgGCCGCGGGUcuggccggGCaGCGCCa -3'
miRNA:   3'- gACGaCGC---------UGGCGCCCA--------CGaCGCGGg -5'
12845 3' -62.7 NC_003387.1 + 18398 0.67 0.281086
Target:  5'- -gGCUGCGacgggucgGCCGCGGGcagcgcggGCUGCucgggcaGCCa -3'
miRNA:   3'- gaCGACGC--------UGGCGCCCa-------CGACG-------CGGg -5'
12845 3' -62.7 NC_003387.1 + 4305 0.67 0.281086
Target:  5'- gUGCUgGUGGCUGUaccacuGGUugcccagGCUGCGCCCg -3'
miRNA:   3'- gACGA-CGCUGGCGc-----CCA-------CGACGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 7515 0.67 0.273023
Target:  5'- -aGuCUGCGGCCgagggugaacgagaGCGGcacUGCUGCcGCCCu -3'
miRNA:   3'- gaC-GACGCUGG--------------CGCCc--ACGACG-CGGG- -5'
12845 3' -62.7 NC_003387.1 + 48771 0.67 0.268406
Target:  5'- uUGCagcGCGACCacCGGGUcguucugcaGCaGCGCCCa -3'
miRNA:   3'- gACGa--CGCUGGc-GCCCA---------CGaCGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 15532 0.67 0.268406
Target:  5'- cCUGCUGC-ACgCGCucgGGGUGCcGgGCCg -3'
miRNA:   3'- -GACGACGcUG-GCG---CCCACGaCgCGGg -5'
12845 3' -62.7 NC_003387.1 + 13043 0.68 0.261919
Target:  5'- gCUGCgucgccuucGCGAUCGCGaGcUGCUGCuCCCa -3'
miRNA:   3'- -GACGa--------CGCUGGCGC-CcACGACGcGGG- -5'
12845 3' -62.7 NC_003387.1 + 2911 0.68 0.261919
Target:  5'- -cGCgGCaGGCCGCGGGcgagGCucucgucgaacUGCGCCa -3'
miRNA:   3'- gaCGaCG-CUGGCGCCCa---CG-----------ACGCGGg -5'
12845 3' -62.7 NC_003387.1 + 17012 0.68 0.255561
Target:  5'- -aGCggGCGcuaaucaaACCGCGGcG-GCUGCcGCCCu -3'
miRNA:   3'- gaCGa-CGC--------UGGCGCC-CaCGACG-CGGG- -5'
12845 3' -62.7 NC_003387.1 + 8251 0.68 0.249329
Target:  5'- gCUGCUGUGcggggccaaccACCGCaaGGUGCacaCGCCCg -3'
miRNA:   3'- -GACGACGC-----------UGGCGc-CCACGac-GCGGG- -5'
12845 3' -62.7 NC_003387.1 + 3603 0.68 0.249329
Target:  5'- -cGCgacggGUGACaGCGGGUGCgcgucgagGUGCUCg -3'
miRNA:   3'- gaCGa----CGCUGgCGCCCACGa-------CGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 10924 0.68 0.249329
Target:  5'- uCUGCcagGCGugCGCcaGGUcGCggcacGCGCCCg -3'
miRNA:   3'- -GACGa--CGCugGCGc-CCA-CGa----CGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.