miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12845 3' -62.7 NC_003387.1 + 1938 0.67 0.281767
Target:  5'- gUGCaGCGcaugauccgGCCGCGGGUcuggccggGCaGCGCCa -3'
miRNA:   3'- gACGaCGC---------UGGCGCCCA--------CGaCGCGGg -5'
12845 3' -62.7 NC_003387.1 + 2911 0.68 0.261919
Target:  5'- -cGCgGCaGGCCGCGGGcgagGCucucgucgaacUGCGCCa -3'
miRNA:   3'- gaCGaCG-CUGGCGCCCa---CG-----------ACGCGGg -5'
12845 3' -62.7 NC_003387.1 + 3335 0.66 0.331891
Target:  5'- cCUGCgcaGCGugCGCaguguGGUGCucaaggaUGCGCaCCa -3'
miRNA:   3'- -GACGa--CGCugGCGc----CCACG-------ACGCG-GG- -5'
12845 3' -62.7 NC_003387.1 + 3603 0.68 0.249329
Target:  5'- -cGCgacggGUGACaGCGGGUGCgcgucgagGUGCUCg -3'
miRNA:   3'- gaCGa----CGCUGgCGCCCACGa-------CGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 3900 0.74 0.094576
Target:  5'- -cGCUGCccgacccuGACCGCcuGGGUGCUaaCGCCCg -3'
miRNA:   3'- gaCGACG--------CUGGCG--CCCACGAc-GCGGG- -5'
12845 3' -62.7 NC_003387.1 + 3939 0.69 0.214546
Target:  5'- -cGCgGCGAUCaGCGGcGagcugGCUGCGCCg -3'
miRNA:   3'- gaCGaCGCUGG-CGCC-Ca----CGACGCGGg -5'
12845 3' -62.7 NC_003387.1 + 4036 0.66 0.332663
Target:  5'- -cGCgaggGCGugCgGUGGGUGCgauaCGCCUc -3'
miRNA:   3'- gaCGa---CGCugG-CGCCCACGac--GCGGG- -5'
12845 3' -62.7 NC_003387.1 + 4277 0.66 0.356455
Target:  5'- -cGCggGCGauggagGCCGCGGGcgaGCaGCGCaCCg -3'
miRNA:   3'- gaCGa-CGC------UGGCGCCCa--CGaCGCG-GG- -5'
12845 3' -62.7 NC_003387.1 + 4305 0.67 0.281086
Target:  5'- gUGCUgGUGGCUGUaccacuGGUugcccagGCUGCGCCCg -3'
miRNA:   3'- gACGA-CGCUGGCGc-----CCA-------CGACGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 4564 0.73 0.101506
Target:  5'- cCUGC-GCGACCGCGcGGgccucgguggcgcGCUGCGCgCg -3'
miRNA:   3'- -GACGaCGCUGGCGC-CCa------------CGACGCGgG- -5'
12845 3' -62.7 NC_003387.1 + 5843 0.71 0.145408
Target:  5'- -gGCUGCG-CCGCaGGUGgggGCGCCg -3'
miRNA:   3'- gaCGACGCuGGCGcCCACga-CGCGGg -5'
12845 3' -62.7 NC_003387.1 + 7203 0.66 0.332663
Target:  5'- -gGCgucaaugGUGGCCGC-GGUGCUGa-CCCg -3'
miRNA:   3'- gaCGa------CGCUGGCGcCCACGACgcGGG- -5'
12845 3' -62.7 NC_003387.1 + 7515 0.67 0.273023
Target:  5'- -aGuCUGCGGCCgagggugaacgagaGCGGcacUGCUGCcGCCCu -3'
miRNA:   3'- gaC-GACGCUGG--------------CGCCc--ACGACG-CGGG- -5'
12845 3' -62.7 NC_003387.1 + 7968 0.71 0.145408
Target:  5'- -cGCUucaCGGCgGgCGGGUGCUGCGCUUc -3'
miRNA:   3'- gaCGAc--GCUGgC-GCCCACGACGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 8251 0.68 0.249329
Target:  5'- gCUGCUGUGcggggccaaccACCGCaaGGUGCacaCGCCCg -3'
miRNA:   3'- -GACGACGC-----------UGGCGc-CCACGac-GCGGG- -5'
12845 3' -62.7 NC_003387.1 + 8779 0.66 0.328047
Target:  5'- -cGCcgUGCGGCgGCGGGcgaccugauucccgcUcaGCUcGCGCCCg -3'
miRNA:   3'- gaCG--ACGCUGgCGCCC---------------A--CGA-CGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 9817 0.69 0.22004
Target:  5'- -cGCUGCaGGCUGCGcauuuuGUGCUG-GCCCc -3'
miRNA:   3'- gaCGACG-CUGGCGCc-----CACGACgCGGG- -5'
12845 3' -62.7 NC_003387.1 + 10924 0.68 0.249329
Target:  5'- uCUGCcagGCGugCGCcaGGUcGCggcacGCGCCCg -3'
miRNA:   3'- -GACGa--CGCugGCGc-CCA-CGa----CGCGGG- -5'
12845 3' -62.7 NC_003387.1 + 11935 0.7 0.184009
Target:  5'- -gGCUGCGAgCGCGGGaucuugGUcgagGCGCaCCu -3'
miRNA:   3'- gaCGACGCUgGCGCCCa-----CGa---CGCG-GG- -5'
12845 3' -62.7 NC_003387.1 + 12457 0.66 0.317462
Target:  5'- -cGCUGgcggcggccUGGCCGCGGGccugGCGUCCg -3'
miRNA:   3'- gaCGAC---------GCUGGCGCCCacgaCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.