Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12846 | 3' | -52.9 | NC_003387.1 | + | 42370 | 0.68 | 0.740834 |
Target: 5'- cGUGCGGaucaugugCGGGCUGCGC-AACGGCu -3' miRNA: 3'- aCAUGCCga------GUCUGGUGUGcUUGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 727 | 0.68 | 0.739766 |
Target: 5'- gUGUcgACGGCcuggccgUCGGugCGCGCGAcguguggcGCGAUg -3' miRNA: 3'- -ACA--UGCCG-------AGUCugGUGUGCU--------UGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 1887 | 0.68 | 0.697365 |
Target: 5'- --cAUGGCgaUCAGcCCGCGCuGAAUGACg -3' miRNA: 3'- acaUGCCG--AGUCuGGUGUG-CUUGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 23938 | 0.69 | 0.675189 |
Target: 5'- cGgcUGGCUC-GACCgggGCACG-GCGACa -3' miRNA: 3'- aCauGCCGAGuCUGG---UGUGCuUGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 29613 | 0.66 | 0.820595 |
Target: 5'- aUGU-CGGguaUCAGucggugcACCGCACGcGCGACg -3' miRNA: 3'- -ACAuGCCg--AGUC-------UGGUGUGCuUGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 45686 | 0.67 | 0.751447 |
Target: 5'- --aGCGGC-CGGGCCugccguugaACGCGAaaGCGGCc -3' miRNA: 3'- acaUGCCGaGUCUGG---------UGUGCU--UGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 5521 | 0.68 | 0.708361 |
Target: 5'- --aGCGGCUC--GCC-CGCGAGCGGg -3' miRNA: 3'- acaUGCCGAGucUGGuGUGCUUGCUg -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 29717 | 0.69 | 0.674075 |
Target: 5'- --gGCGGCgccCAGGCCgacgacggcagcuACGCGGGCGAg -3' miRNA: 3'- acaUGCCGa--GUCUGG-------------UGUGCUUGCUg -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 42319 | 0.67 | 0.751447 |
Target: 5'- ---gUGGCgcgacgagCAGAUCAC-CGAGCGGCa -3' miRNA: 3'- acauGCCGa-------GUCUGGUGuGCUUGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 10651 | 0.69 | 0.652843 |
Target: 5'- gGUACGGCguUCGG-CCucgACGCGGcuGCGACc -3' miRNA: 3'- aCAUGCCG--AGUCuGG---UGUGCU--UGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 38621 | 0.68 | 0.719279 |
Target: 5'- cUGUuCGGCccgCAGGCCGCGCuGGCGcuGCa -3' miRNA: 3'- -ACAuGCCGa--GUCUGGUGUGcUUGC--UG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 52491 | 0.68 | 0.740834 |
Target: 5'- uUGggGCGGCUCAccgcaagugcaACCGCGacaaGAGCGACa -3' miRNA: 3'- -ACa-UGCCGAGUc----------UGGUGUg---CUUGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 8363 | 0.68 | 0.708361 |
Target: 5'- cUGUuCGGCaugCAGGCCGCGguguucUGGACGAUc -3' miRNA: 3'- -ACAuGCCGa--GUCUGGUGU------GCUUGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 29535 | 0.68 | 0.697365 |
Target: 5'- --aACGGCaaggUC-GACCggGCAUGAGCGACg -3' miRNA: 3'- acaUGCCG----AGuCUGG--UGUGCUUGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 45818 | 0.68 | 0.697365 |
Target: 5'- aUGUcccGCGGCUgAuGGCC-CGCG-ACGACg -3' miRNA: 3'- -ACA---UGCCGAgU-CUGGuGUGCuUGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 38280 | 0.68 | 0.686304 |
Target: 5'- -aUAUGGUUCAucCCGCGCG-GCGGCa -3' miRNA: 3'- acAUGCCGAGUcuGGUGUGCuUGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 5207 | 0.66 | 0.839865 |
Target: 5'- cUGUgGCGcCUCGGguACCGCACGAugcugcuCGACa -3' miRNA: 3'- -ACA-UGCcGAGUC--UGGUGUGCUu------GCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 10012 | 0.66 | 0.821534 |
Target: 5'- --cGCGGC-CGGGCgACgACG-ACGACg -3' miRNA: 3'- acaUGCCGaGUCUGgUG-UGCuUGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 46965 | 0.67 | 0.772281 |
Target: 5'- --cGCGGC-CGGuuCCGCuacauGCGGGCGACg -3' miRNA: 3'- acaUGCCGaGUCu-GGUG-----UGCUUGCUG- -5' |
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12846 | 3' | -52.9 | NC_003387.1 | + | 24920 | 0.67 | 0.761933 |
Target: 5'- aGUGC-GUUguGACCGcCGCGAcCGACg -3' miRNA: 3'- aCAUGcCGAguCUGGU-GUGCUuGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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