miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12846 3' -52.9 NC_003387.1 + 14405 1.11 0.00129
Target:  5'- cUGUACGGCUCAGACCACACGAACGACg -3'
miRNA:   3'- -ACAUGCCGAGUCUGGUGUGCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 26582 0.82 0.121045
Target:  5'- ----gGGgUCAGGCCGCGCGAGCGGCg -3'
miRNA:   3'- acaugCCgAGUCUGGUGUGCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 49660 0.78 0.223037
Target:  5'- uUGUACGGCUC-GACCGagGCGGGCGGg -3'
miRNA:   3'- -ACAUGCCGAGuCUGGUg-UGCUUGCUg -5'
12846 3' -52.9 NC_003387.1 + 28435 0.76 0.30502
Target:  5'- --gGCGGCUCauGGugUACACGAuCGACg -3'
miRNA:   3'- acaUGCCGAG--UCugGUGUGCUuGCUG- -5'
12846 3' -52.9 NC_003387.1 + 28859 0.74 0.380465
Target:  5'- -cUGCGGgUCGGACUgguacCGCGAGCGGCa -3'
miRNA:   3'- acAUGCCgAGUCUGGu----GUGCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 45349 0.74 0.398841
Target:  5'- cGUGCaGCUCAGGCgACGCGcuCGAg -3'
miRNA:   3'- aCAUGcCGAGUCUGgUGUGCuuGCUg -5'
12846 3' -52.9 NC_003387.1 + 20063 0.73 0.408239
Target:  5'- gGUAgGGCUCAGuGgCACAaggUGAACGACg -3'
miRNA:   3'- aCAUgCCGAGUC-UgGUGU---GCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 12287 0.73 0.437247
Target:  5'- --gGCGGCcggaucagCGGGCCgggcaccgGCACGAGCGACa -3'
miRNA:   3'- acaUGCCGa-------GUCUGG--------UGUGCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 20173 0.73 0.447176
Target:  5'- cGU-CGGCUC--GCCAC-CGGACGGCg -3'
miRNA:   3'- aCAuGCCGAGucUGGUGuGCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 46304 0.72 0.498596
Target:  5'- --gGCGGCgcagCGGGCCGCugGGAagGGCa -3'
miRNA:   3'- acaUGCCGa---GUCUGGUGugCUUg-CUG- -5'
12846 3' -52.9 NC_003387.1 + 3724 0.72 0.509201
Target:  5'- --aGCGGCcaCAG-CCACGCGAuCGACg -3'
miRNA:   3'- acaUGCCGa-GUCuGGUGUGCUuGCUG- -5'
12846 3' -52.9 NC_003387.1 + 19471 0.71 0.552488
Target:  5'- gUGUG-GGCgccgAGGCCAcCGCGGGCGACg -3'
miRNA:   3'- -ACAUgCCGag--UCUGGU-GUGCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 52587 0.71 0.563492
Target:  5'- --gGCGGCgCGGAUCGCGaGGGCGACc -3'
miRNA:   3'- acaUGCCGaGUCUGGUGUgCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 44965 0.7 0.582326
Target:  5'- --cGCGGCUCAGGCCGCGaucgccgcugccgcCGAGgCGGu -3'
miRNA:   3'- acaUGCCGAGUCUGGUGU--------------GCUU-GCUg -5'
12846 3' -52.9 NC_003387.1 + 17598 0.7 0.585664
Target:  5'- --cACGGCUUAGGCgGCAUGAcguuguccuCGACg -3'
miRNA:   3'- acaUGCCGAGUCUGgUGUGCUu--------GCUG- -5'
12846 3' -52.9 NC_003387.1 + 21779 0.7 0.595699
Target:  5'- cUGUuCGcGCUCAaguuGACCGCggcggccagcucgGCGAGCGACg -3'
miRNA:   3'- -ACAuGC-CGAGU----CUGGUG-------------UGCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 52000 0.7 0.596815
Target:  5'- --gACGGC-CAGGCCgucgACACGAugccuuGCGGCg -3'
miRNA:   3'- acaUGCCGaGUCUGG----UGUGCU------UGCUG- -5'
12846 3' -52.9 NC_003387.1 + 8095 0.7 0.601285
Target:  5'- --cGCGGCcaGGGCCACACGcucgcgccacggcccGACGGCg -3'
miRNA:   3'- acaUGCCGagUCUGGUGUGC---------------UUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 13710 0.7 0.607998
Target:  5'- --cGCGGCcCAGGCgGCGCaGGGCGAUc -3'
miRNA:   3'- acaUGCCGaGUCUGgUGUG-CUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 2726 0.7 0.607998
Target:  5'- --gGCGGCgggCAGGCCACGCagcagccgguGAACGuGCg -3'
miRNA:   3'- acaUGCCGa--GUCUGGUGUG----------CUUGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.