miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12846 3' -52.9 NC_003387.1 + 5803 0.67 0.781466
Target:  5'- gGUGCccGGCUCAagcgugcGGCCguGCACG-ACGACc -3'
miRNA:   3'- aCAUG--CCGAGU-------CUGG--UGUGCuUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 1072 0.67 0.780452
Target:  5'- cGUuaGCGGCacuauugccagugUCAGGgccucgacggcggUCACAUGAGCGACg -3'
miRNA:   3'- aCA--UGCCG-------------AGUCU-------------GGUGUGCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 46965 0.67 0.772281
Target:  5'- --cGCGGC-CGGuuCCGCuacauGCGGGCGACg -3'
miRNA:   3'- acaUGCCGaGUCu-GGUG-----UGCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 8197 0.67 0.772281
Target:  5'- -cUGCGGCgccgggCGGcCCgGCACGAACaGACg -3'
miRNA:   3'- acAUGCCGa-----GUCuGG-UGUGCUUG-CUG- -5'
12846 3' -52.9 NC_003387.1 + 36620 0.67 0.772281
Target:  5'- --cGCGGCUgCuGGCCGcCGCGAugccCGACg -3'
miRNA:   3'- acaUGCCGA-GuCUGGU-GUGCUu---GCUG- -5'
12846 3' -52.9 NC_003387.1 + 9749 0.67 0.761933
Target:  5'- gGU-CGGC-CAGGCuCACGCGcaugccggGGCGGCa -3'
miRNA:   3'- aCAuGCCGaGUCUG-GUGUGC--------UUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 24920 0.67 0.761933
Target:  5'- aGUGC-GUUguGACCGcCGCGAcCGACg -3'
miRNA:   3'- aCAUGcCGAguCUGGU-GUGCUuGCUG- -5'
12846 3' -52.9 NC_003387.1 + 29226 0.67 0.761933
Target:  5'- --gACGGCaaGGugCGCACGAuccCGGCc -3'
miRNA:   3'- acaUGCCGagUCugGUGUGCUu--GCUG- -5'
12846 3' -52.9 NC_003387.1 + 42319 0.67 0.751447
Target:  5'- ---gUGGCgcgacgagCAGAUCAC-CGAGCGGCa -3'
miRNA:   3'- acauGCCGa-------GUCUGGUGuGCUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 20962 0.67 0.751447
Target:  5'- gGUGCgGGCUCGgcGACCAgGuCGAGCaggGACa -3'
miRNA:   3'- aCAUG-CCGAGU--CUGGUgU-GCUUG---CUG- -5'
12846 3' -52.9 NC_003387.1 + 4076 0.67 0.751447
Target:  5'- cGUGCGGgUUcuGCCGCAUGcucGCGACc -3'
miRNA:   3'- aCAUGCCgAGucUGGUGUGCu--UGCUG- -5'
12846 3' -52.9 NC_003387.1 + 45686 0.67 0.751447
Target:  5'- --aGCGGC-CGGGCCugccguugaACGCGAaaGCGGCc -3'
miRNA:   3'- acaUGCCGaGUCUGG---------UGUGCU--UGCUG- -5'
12846 3' -52.9 NC_003387.1 + 22963 0.68 0.745093
Target:  5'- cGUGgGGCgccccggucaucgugUCGGGCgGCGCcGACGACg -3'
miRNA:   3'- aCAUgCCG---------------AGUCUGgUGUGcUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 8401 0.68 0.74403
Target:  5'- cGUGCGGUgucggggccucgcCGGugCGCGCGAgguaaucgagagacACGGCg -3'
miRNA:   3'- aCAUGCCGa------------GUCugGUGUGCU--------------UGCUG- -5'
12846 3' -52.9 NC_003387.1 + 52491 0.68 0.740834
Target:  5'- uUGggGCGGCUCAccgcaagugcaACCGCGacaaGAGCGACa -3'
miRNA:   3'- -ACa-UGCCGAGUc----------UGGUGUg---CUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 42370 0.68 0.740834
Target:  5'- cGUGCGGaucaugugCGGGCUGCGC-AACGGCu -3'
miRNA:   3'- aCAUGCCga------GUCUGGUGUGcUUGCUG- -5'
12846 3' -52.9 NC_003387.1 + 727 0.68 0.739766
Target:  5'- gUGUcgACGGCcuggccgUCGGugCGCGCGAcguguggcGCGAUg -3'
miRNA:   3'- -ACA--UGCCG-------AGUCugGUGUGCU--------UGCUG- -5'
12846 3' -52.9 NC_003387.1 + 38621 0.68 0.719279
Target:  5'- cUGUuCGGCccgCAGGCCGCGCuGGCGcuGCa -3'
miRNA:   3'- -ACAuGCCGa--GUCUGGUGUGcUUGC--UG- -5'
12846 3' -52.9 NC_003387.1 + 5521 0.68 0.708361
Target:  5'- --aGCGGCUC--GCC-CGCGAGCGGg -3'
miRNA:   3'- acaUGCCGAGucUGGuGUGCUUGCUg -5'
12846 3' -52.9 NC_003387.1 + 8363 0.68 0.708361
Target:  5'- cUGUuCGGCaugCAGGCCGCGguguucUGGACGAUc -3'
miRNA:   3'- -ACAuGCCGa--GUCUGGUGU------GCUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.