miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12846 5' -57.9 NC_003387.1 + 14233 0.66 0.540254
Target:  5'- -cGCCcacgGCCGCuCGGGAUcGGGCCGa-- -3'
miRNA:   3'- caCGG----CGGCGcGCCCUA-CUUGGUaua -5'
12846 5' -57.9 NC_003387.1 + 17089 0.66 0.540254
Target:  5'- aGUGCCcgcccgGCCGCcucgGCGGGcuccucgGGGCCGUAg -3'
miRNA:   3'- -CACGG------CGGCG----CGCCCua-----CUUGGUAUa -5'
12846 5' -57.9 NC_003387.1 + 30583 0.66 0.519034
Target:  5'- cGUGCCGCgaGUGCGGGuacgucGGCCAc-- -3'
miRNA:   3'- -CACGGCGg-CGCGCCCuac---UUGGUaua -5'
12846 5' -57.9 NC_003387.1 + 40453 0.66 0.508547
Target:  5'- -gGCCGCCggucgccagGCGCGGGAUauucgGGAUCGg-- -3'
miRNA:   3'- caCGGCGG---------CGCGCCCUA-----CUUGGUaua -5'
12846 5' -57.9 NC_003387.1 + 23833 0.66 0.498151
Target:  5'- -gGgCGCCGCGcCGGGAcucgGcGCCGUGc -3'
miRNA:   3'- caCgGCGGCGC-GCCCUa---CuUGGUAUa -5'
12846 5' -57.9 NC_003387.1 + 2536 0.67 0.487851
Target:  5'- uUGCCGUcccgguCGCGCaGGAUGAACUc--- -3'
miRNA:   3'- cACGGCG------GCGCGcCCUACUUGGuaua -5'
12846 5' -57.9 NC_003387.1 + 52169 0.67 0.487851
Target:  5'- -aGCCGCCGCGUcaGGGc--AGCCAg-- -3'
miRNA:   3'- caCGGCGGCGCG--CCCuacUUGGUaua -5'
12846 5' -57.9 NC_003387.1 + 32617 0.67 0.477652
Target:  5'- -gGCuCGCCGCGgGGGcgcugacccuAUGAGCCu--- -3'
miRNA:   3'- caCG-GCGGCGCgCCC----------UACUUGGuaua -5'
12846 5' -57.9 NC_003387.1 + 5623 0.67 0.476638
Target:  5'- -gGCCGCguUGCgGCGGGuuuuguugaugcgGUGAACCGUGc -3'
miRNA:   3'- caCGGCG--GCG-CGCCC-------------UACUUGGUAUa -5'
12846 5' -57.9 NC_003387.1 + 27522 0.67 0.46756
Target:  5'- -gGCCGCCGcCGCGaGGuugccuguAUGAGCCu--- -3'
miRNA:   3'- caCGGCGGC-GCGC-CC--------UACUUGGuaua -5'
12846 5' -57.9 NC_003387.1 + 45786 0.67 0.46756
Target:  5'- -cGCCGCUGCGCaGGccgcGAUGAugGCCGa-- -3'
miRNA:   3'- caCGGCGGCGCG-CC----CUACU--UGGUaua -5'
12846 5' -57.9 NC_003387.1 + 35328 0.67 0.46756
Target:  5'- -cGUCGCCGguCGCGGGAauuucGGCCAUGa -3'
miRNA:   3'- caCGGCGGC--GCGCCCUac---UUGGUAUa -5'
12846 5' -57.9 NC_003387.1 + 14879 0.67 0.457578
Target:  5'- -aGCCGCCggGCGCaGGGGUGcccGACCu--- -3'
miRNA:   3'- caCGGCGG--CGCG-CCCUAC---UUGGuaua -5'
12846 5' -57.9 NC_003387.1 + 52276 0.67 0.456586
Target:  5'- -gGCCGCCGCGgCGGcGAcaGAcuuaaccGCCAUAa -3'
miRNA:   3'- caCGGCGGCGC-GCC-CUa-CU-------UGGUAUa -5'
12846 5' -57.9 NC_003387.1 + 1104 0.68 0.409473
Target:  5'- gGUGcCCGCgaGCGCGGGuucGGCCGUGg -3'
miRNA:   3'- -CAC-GGCGg-CGCGCCCuacUUGGUAUa -5'
12846 5' -57.9 NC_003387.1 + 30610 0.68 0.391132
Target:  5'- uUGCCGCCaGgGCcgccgGGGAUGGcGCCGUAc -3'
miRNA:   3'- cACGGCGG-CgCG-----CCCUACU-UGGUAUa -5'
12846 5' -57.9 NC_003387.1 + 23095 0.69 0.373335
Target:  5'- -cGCCGUCGCGCGuGcGGUGcACCGa-- -3'
miRNA:   3'- caCGGCGGCGCGC-C-CUACuUGGUaua -5'
12846 5' -57.9 NC_003387.1 + 13964 0.69 0.364645
Target:  5'- uUGCCGCCcCGCGGGcaaucucGAACCGc-- -3'
miRNA:   3'- cACGGCGGcGCGCCCua-----CUUGGUaua -5'
12846 5' -57.9 NC_003387.1 + 8250 0.7 0.323327
Target:  5'- -cGCUGCUGUGCGGGGccAACCAc-- -3'
miRNA:   3'- caCGGCGGCGCGCCCUacUUGGUaua -5'
12846 5' -57.9 NC_003387.1 + 51765 0.7 0.30026
Target:  5'- cUGCgGCCGUGCGGGuccgGUGcGCCGUc- -3'
miRNA:   3'- cACGgCGGCGCGCCC----UACuUGGUAua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.