miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12848 5' -57.2 NC_003387.1 + 30669 0.66 0.592479
Target:  5'- aACGGUGccgGUGAUcGCCGCCaC-CGCc -3'
miRNA:   3'- aUGUCGCa--CACUAaCGGCGG-GaGCGc -5'
12848 5' -57.2 NC_003387.1 + 24618 0.66 0.581547
Target:  5'- -uCAGCGccucaagGUcGUUGCCGCCCUgGuCGa -3'
miRNA:   3'- auGUCGCa------CAcUAACGGCGGGAgC-GC- -5'
12848 5' -57.2 NC_003387.1 + 15159 0.66 0.581547
Target:  5'- gGCAGCGUGaUGA--GCaGCCCgucggcgacgaUCGCGg -3'
miRNA:   3'- aUGUCGCAC-ACUaaCGgCGGG-----------AGCGC- -5'
12848 5' -57.2 NC_003387.1 + 44607 0.66 0.570658
Target:  5'- aGCAGCGcGUacGAgcuggGCuCGCCCUCGgGc -3'
miRNA:   3'- aUGUCGCaCA--CUaa---CG-GCGGGAGCgC- -5'
12848 5' -57.2 NC_003387.1 + 14825 0.67 0.527679
Target:  5'- gGCAGCGg------GUCGCCCUCGgGg -3'
miRNA:   3'- aUGUCGCacacuaaCGGCGGGAGCgC- -5'
12848 5' -57.2 NC_003387.1 + 14983 0.67 0.506637
Target:  5'- aGCAGCuUGccgucGAaugUUGCCGCCCUCGg- -3'
miRNA:   3'- aUGUCGcACa----CU---AACGGCGGGAGCgc -5'
12848 5' -57.2 NC_003387.1 + 2237 0.67 0.485962
Target:  5'- -cCAGCGUcaGccaGUUGCCGacgaCCUCGCGg -3'
miRNA:   3'- auGUCGCAcaC---UAACGGCg---GGAGCGC- -5'
12848 5' -57.2 NC_003387.1 + 4744 0.68 0.475775
Target:  5'- aGCAcCGUuUGccGUUGCCGCCCagcUCGCGg -3'
miRNA:   3'- aUGUcGCAcAC--UAACGGCGGG---AGCGC- -5'
12848 5' -57.2 NC_003387.1 + 6947 0.68 0.453748
Target:  5'- gGguGCGUGaGGgcacccugcugGCCGCCCUCGuCGa -3'
miRNA:   3'- aUguCGCACaCUaa---------CGGCGGGAGC-GC- -5'
12848 5' -57.2 NC_003387.1 + 47172 0.68 0.436146
Target:  5'- cGCGGUGgcccUGGUgGUCGCCCUCGgGg -3'
miRNA:   3'- aUGUCGCac--ACUAaCGGCGGGAGCgC- -5'
12848 5' -57.2 NC_003387.1 + 23230 0.68 0.436146
Target:  5'- cUGCGGC-UGUGGUgcucGgCGCCCUCGgGc -3'
miRNA:   3'- -AUGUCGcACACUAa---CgGCGGGAGCgC- -5'
12848 5' -57.2 NC_003387.1 + 13397 0.68 0.426538
Target:  5'- cGCcGCG-GUGAUcacaGCaCGCCCUCGCc -3'
miRNA:   3'- aUGuCGCaCACUAa---CG-GCGGGAGCGc -5'
12848 5' -57.2 NC_003387.1 + 45254 0.69 0.417057
Target:  5'- cGCGGCucgGUGAUcGCCugGCCCaUCGCGu -3'
miRNA:   3'- aUGUCGca-CACUAaCGG--CGGG-AGCGC- -5'
12848 5' -57.2 NC_003387.1 + 52096 0.69 0.417057
Target:  5'- cGCGGCG-GcGAc-GCUGCCCUCGCc -3'
miRNA:   3'- aUGUCGCaCaCUaaCGGCGGGAGCGc -5'
12848 5' -57.2 NC_003387.1 + 36846 0.69 0.398487
Target:  5'- gGCGGCGcUGUGA---CCGCCCUCaaGCa -3'
miRNA:   3'- aUGUCGC-ACACUaacGGCGGGAG--CGc -5'
12848 5' -57.2 NC_003387.1 + 31758 0.69 0.375154
Target:  5'- cGCGGCGUugcccgccccugcccG-GAUgacGCCGCCCUCGgGa -3'
miRNA:   3'- aUGUCGCA---------------CaCUAa--CGGCGGGAGCgC- -5'
12848 5' -57.2 NC_003387.1 + 40347 0.69 0.371647
Target:  5'- aGCAGCGgcaGAUUGCgGgCCgUCGCGg -3'
miRNA:   3'- aUGUCGCacaCUAACGgC-GGgAGCGC- -5'
12848 5' -57.2 NC_003387.1 + 24224 0.69 0.371647
Target:  5'- -uUAGCGUcgucGUGGUUGCCGCCgaCGaCGu -3'
miRNA:   3'- auGUCGCA----CACUAACGGCGGgaGC-GC- -5'
12848 5' -57.2 NC_003387.1 + 44628 0.7 0.362978
Target:  5'- cGCgAGCGUGUGGcccugGCCGCggCCUCgGCGa -3'
miRNA:   3'- aUG-UCGCACACUaa---CGGCG--GGAG-CGC- -5'
12848 5' -57.2 NC_003387.1 + 14208 0.72 0.27707
Target:  5'- -uCGGCGcucacUUGCCGCCCUCGCa -3'
miRNA:   3'- auGUCGCacacuAACGGCGGGAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.