miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12850 3' -53.7 NC_003387.1 + 10936 0.68 0.711011
Target:  5'- gCGCcaGGUCGCGGCacgcgcccggCUUGAcgucgAGGUCGc -3'
miRNA:   3'- gGCG--CUAGCGCCG----------GAACUaa---UCCAGC- -5'
12850 3' -53.7 NC_003387.1 + 41105 0.68 0.711011
Target:  5'- gCgGCGGUCGCGGCCUucgUGAUgcc--CGa -3'
miRNA:   3'- -GgCGCUAGCGCCGGA---ACUAauccaGC- -5'
12850 3' -53.7 NC_003387.1 + 1592 0.68 0.700228
Target:  5'- -gGCGGUCGacaugucgcaCGGCCUggcGAUUucGGUCGg -3'
miRNA:   3'- ggCGCUAGC----------GCCGGAa--CUAAu-CCAGC- -5'
12850 3' -53.7 NC_003387.1 + 17775 0.69 0.667527
Target:  5'- aUCGCGAgcuugCGCagcggcacGGCCggGAUcAGGUCGu -3'
miRNA:   3'- -GGCGCUa----GCG--------CCGGaaCUAaUCCAGC- -5'
12850 3' -53.7 NC_003387.1 + 7758 0.69 0.645542
Target:  5'- gCgGCGAUCGCGGCCU-GAgccgcGGcCu -3'
miRNA:   3'- -GgCGCUAGCGCCGGAaCUaau--CCaGc -5'
12850 3' -53.7 NC_003387.1 + 42103 0.69 0.623507
Target:  5'- gCCGCGGUCGCGuCCUgcaUGAccgAGG-CGa -3'
miRNA:   3'- -GGCGCUAGCGCcGGA---ACUaa-UCCaGC- -5'
12850 3' -53.7 NC_003387.1 + 23358 0.69 0.623507
Target:  5'- cCCGCGAgcaagUGaUGGCCgagcUGAUUcGGGUCGc -3'
miRNA:   3'- -GGCGCUa----GC-GCCGGa---ACUAA-UCCAGC- -5'
12850 3' -53.7 NC_003387.1 + 24934 0.7 0.612497
Target:  5'- gCCGCGAcCGacggcgGGCCgccUGAUggccUGGGUCGg -3'
miRNA:   3'- -GGCGCUaGCg-----CCGGa--ACUA----AUCCAGC- -5'
12850 3' -53.7 NC_003387.1 + 35329 0.71 0.5471
Target:  5'- gUCGcCGGUCGCgggaauuucGGCCaUGAcUAGGUCGc -3'
miRNA:   3'- -GGC-GCUAGCG---------CCGGaACUaAUCCAGC- -5'
12850 3' -53.7 NC_003387.1 + 1001 0.72 0.463833
Target:  5'- aCCGgGGUCggaugcgcuGCGGCCUUGcgUuugcGGGUCa -3'
miRNA:   3'- -GGCgCUAG---------CGCCGGAACuaA----UCCAGc -5'
12850 3' -53.7 NC_003387.1 + 16045 0.72 0.463833
Target:  5'- cCCGCGGUgaaCGCGGCC------AGGUCGg -3'
miRNA:   3'- -GGCGCUA---GCGCCGGaacuaaUCCAGC- -5'
12850 3' -53.7 NC_003387.1 + 40906 0.73 0.430477
Target:  5'- gCCGCGAUCGCGGUCgggcgguggccUGAUggacggcgagcuGGUCGc -3'
miRNA:   3'- -GGCGCUAGCGCCGGa----------ACUAau----------CCAGC- -5'
12850 3' -53.7 NC_003387.1 + 37806 0.74 0.382304
Target:  5'- cCCGCGGUCGCagcagcgcgcgaucgGGCCgagcg-AGGUCGg -3'
miRNA:   3'- -GGCGCUAGCG---------------CCGGaacuaaUCCAGC- -5'
12850 3' -53.7 NC_003387.1 + 40878 0.74 0.37875
Target:  5'- gCCGCGAUCaugucccagGCGGCCUUGAUgaacGG-Ca -3'
miRNA:   3'- -GGCGCUAG---------CGCCGGAACUAau--CCaGc -5'
12850 3' -53.7 NC_003387.1 + 6291 0.74 0.352808
Target:  5'- aCGCGAcCGUGGCCgugcUGAccgAGGUCGc -3'
miRNA:   3'- gGCGCUaGCGCCGGa---ACUaa-UCCAGC- -5'
12850 3' -53.7 NC_003387.1 + 40361 0.75 0.328149
Target:  5'- gCCGUGAUCGCGGCCggGGccaAGGgccUCGa -3'
miRNA:   3'- -GGCGCUAGCGCCGGaaCUaa-UCC---AGC- -5'
12850 3' -53.7 NC_003387.1 + 41970 0.76 0.275657
Target:  5'- aCCgGCGAUCGCGGCCgUGucagcGGUCa -3'
miRNA:   3'- -GG-CGCUAGCGCCGGaACuaau-CCAGc -5'
12850 3' -53.7 NC_003387.1 + 11828 1.1 0.001383
Target:  5'- gCCGCGAUCGCGGCCUUGAUUAGGUCGc -3'
miRNA:   3'- -GGCGCUAGCGCCGGAACUAAUCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.