miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12850 5' -53.6 NC_003387.1 + 32274 0.66 0.825491
Target:  5'- aUCUGACUaacGCGgcugGUGUCGGUGuAGuCGa -3'
miRNA:   3'- -AGGCUGG---UGUaa--CACAGCCAC-UC-GCg -5'
12850 5' -53.6 NC_003387.1 + 25420 0.66 0.787184
Target:  5'- uUUCGACUACAUcGUGcuuaUCGGauacucgcaGGGCGCg -3'
miRNA:   3'- -AGGCUGGUGUAaCAC----AGCCa--------CUCGCG- -5'
12850 5' -53.6 NC_003387.1 + 1950 0.66 0.77717
Target:  5'- aUCCGGCCGCGggucUG-GcCGG-GcAGCGCc -3'
miRNA:   3'- -AGGCUGGUGUa---ACaCaGCCaC-UCGCG- -5'
12850 5' -53.6 NC_003387.1 + 41150 0.66 0.77717
Target:  5'- -aCGGCCGCugcgaGUGUCaGGgcGAGUGCg -3'
miRNA:   3'- agGCUGGUGuaa--CACAG-CCa-CUCGCG- -5'
12850 5' -53.6 NC_003387.1 + 13522 0.67 0.767004
Target:  5'- cCCGACCGCGggGgccUGGUcGAGCuGCa -3'
miRNA:   3'- aGGCUGGUGUaaCacaGCCA-CUCG-CG- -5'
12850 5' -53.6 NC_003387.1 + 44815 0.67 0.746258
Target:  5'- cUUCGGCCACAc-GUGcgcgCGGgcacGAGUGCg -3'
miRNA:   3'- -AGGCUGGUGUaaCACa---GCCa---CUCGCG- -5'
12850 5' -53.6 NC_003387.1 + 733 0.67 0.725043
Target:  5'- -aCGGCCugGcc--GUCGGUGcGCGCg -3'
miRNA:   3'- agGCUGGugUaacaCAGCCACuCGCG- -5'
12850 5' -53.6 NC_003387.1 + 22170 0.67 0.723971
Target:  5'- aCCGGCCGCGgcgGcgguccaUGUCGG--GGCGCc -3'
miRNA:   3'- aGGCUGGUGUaa-C-------ACAGCCacUCGCG- -5'
12850 5' -53.6 NC_003387.1 + 6152 0.68 0.703451
Target:  5'- cCCGagGCCG-AUUGgGUCGGUGAGUcuGCg -3'
miRNA:   3'- aGGC--UGGUgUAACaCAGCCACUCG--CG- -5'
12850 5' -53.6 NC_003387.1 + 41237 0.68 0.703451
Target:  5'- aCCGcCCACGagGcauUGUCGGccaugaacuUGAGCGCc -3'
miRNA:   3'- aGGCuGGUGUaaC---ACAGCC---------ACUCGCG- -5'
12850 5' -53.6 NC_003387.1 + 12593 0.68 0.692543
Target:  5'- cCCGAUCACcc---GUCGGgccGGGCGCu -3'
miRNA:   3'- aGGCUGGUGuaacaCAGCCa--CUCGCG- -5'
12850 5' -53.6 NC_003387.1 + 1916 0.68 0.670561
Target:  5'- gUCGGCCGCggUGagGUCGaucGUGcAGCGCa -3'
miRNA:   3'- aGGCUGGUGuaACa-CAGC---CAC-UCGCG- -5'
12850 5' -53.6 NC_003387.1 + 18304 0.69 0.659509
Target:  5'- cCCGGCCGCGg-----CGGUG-GCGCc -3'
miRNA:   3'- aGGCUGGUGUaacacaGCCACuCGCG- -5'
12850 5' -53.6 NC_003387.1 + 22955 0.69 0.652865
Target:  5'- gCUGACCGCGUggggcgccccggucaUcGUGUCGGgcGGCGCc -3'
miRNA:   3'- aGGCUGGUGUA---------------A-CACAGCCacUCGCG- -5'
12850 5' -53.6 NC_003387.1 + 18519 0.69 0.619585
Target:  5'- aCCGACCGCGacguggcgcuguggcUUGUGcgCGaGUcguucGAGCGCa -3'
miRNA:   3'- aGGCUGGUGU---------------AACACa-GC-CA-----CUCGCG- -5'
12850 5' -53.6 NC_003387.1 + 1751 0.7 0.593019
Target:  5'- cCCGGCCGCuaucgGcUCGG-GGGCGCu -3'
miRNA:   3'- aGGCUGGUGuaacaC-AGCCaCUCGCG- -5'
12850 5' -53.6 NC_003387.1 + 4569 0.7 0.582
Target:  5'- -gCGACCGCGcgGgccUCGGUG-GCGCg -3'
miRNA:   3'- agGCUGGUGUaaCac-AGCCACuCGCG- -5'
12850 5' -53.6 NC_003387.1 + 42725 0.71 0.527702
Target:  5'- cCCGGCCGCGggaacggGUCGG-GuGCGCc -3'
miRNA:   3'- aGGCUGGUGUaaca---CAGCCaCuCGCG- -5'
12850 5' -53.6 NC_003387.1 + 24859 0.71 0.527702
Target:  5'- cUCGACCGCGccgGUGUCGaucGUG-GCGCc -3'
miRNA:   3'- aGGCUGGUGUaa-CACAGC---CACuCGCG- -5'
12850 5' -53.6 NC_003387.1 + 38681 0.71 0.506495
Target:  5'- cUCGACgGCg--GUGUCGaGUGaAGCGCa -3'
miRNA:   3'- aGGCUGgUGuaaCACAGC-CAC-UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.