miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12851 5' -53.4 NC_003387.1 + 23424 0.66 0.816694
Target:  5'- cGUGccCGcgGUCGCCGgggaacagggcgUCGAUGCGGg- -3'
miRNA:   3'- -CACa-GUuaCAGCGGC------------AGCUGCGUCag -5'
12851 5' -53.4 NC_003387.1 + 26706 0.66 0.807132
Target:  5'- -cGUCGA---CGCCGUCGuGCGCGG-Cg -3'
miRNA:   3'- caCAGUUacaGCGGCAGC-UGCGUCaG- -5'
12851 5' -53.4 NC_003387.1 + 28775 0.66 0.807132
Target:  5'- -gGcCcAUGUCGCCGUgccCGCGGUCg -3'
miRNA:   3'- caCaGuUACAGCGGCAgcuGCGUCAG- -5'
12851 5' -53.4 NC_003387.1 + 15407 0.66 0.807132
Target:  5'- -cGUCcacg--GCaCGUCGGCGCGGUCg -3'
miRNA:   3'- caCAGuuacagCG-GCAGCUGCGUCAG- -5'
12851 5' -53.4 NC_003387.1 + 19566 0.66 0.791443
Target:  5'- cUGUCGAgucggcuggcgagccUGcUCGgCGUCGACgugugGCAGUCg -3'
miRNA:   3'- cACAGUU---------------AC-AGCgGCAGCUG-----CGUCAG- -5'
12851 5' -53.4 NC_003387.1 + 30221 0.66 0.777353
Target:  5'- -cGUCGAgcgCGCCGcCGAgGCcGUCg -3'
miRNA:   3'- caCAGUUacaGCGGCaGCUgCGuCAG- -5'
12851 5' -53.4 NC_003387.1 + 16329 0.67 0.77122
Target:  5'- gGUGUCGAUGUUGaCCGcggcgaccuccaaaaUCGcuGCGCcGUCa -3'
miRNA:   3'- -CACAGUUACAGC-GGC---------------AGC--UGCGuCAG- -5'
12851 5' -53.4 NC_003387.1 + 45115 0.67 0.767101
Target:  5'- -gGUCAcuugGUCGCCGUgCGuC-CAGUCa -3'
miRNA:   3'- caCAGUua--CAGCGGCA-GCuGcGUCAG- -5'
12851 5' -53.4 NC_003387.1 + 1365 0.67 0.756704
Target:  5'- ---cCAcgGcaccUCGCCGUCGGCGCucagcgGGUCg -3'
miRNA:   3'- cacaGUuaC----AGCGGCAGCUGCG------UCAG- -5'
12851 5' -53.4 NC_003387.1 + 44017 0.67 0.756704
Target:  5'- -cGUCGAgcg-GCuCGUCGACGuCGGUCg -3'
miRNA:   3'- caCAGUUacagCG-GCAGCUGC-GUCAG- -5'
12851 5' -53.4 NC_003387.1 + 19464 0.67 0.752508
Target:  5'- cGUGUCAGUGUgggCGCCGaggccaccgcgggCGACGUguGGUUc -3'
miRNA:   3'- -CACAGUUACA---GCGGCa------------GCUGCG--UCAG- -5'
12851 5' -53.4 NC_003387.1 + 21281 0.67 0.746176
Target:  5'- gGUGgcgCAccgcGUCGUCGUCGAgGCcGUCg -3'
miRNA:   3'- -CACa--GUua--CAGCGGCAGCUgCGuCAG- -5'
12851 5' -53.4 NC_003387.1 + 33042 0.67 0.735529
Target:  5'- -cGUCGAacgaGCCGUCGACGCccaGGUg -3'
miRNA:   3'- caCAGUUacagCGGCAGCUGCG---UCAg -5'
12851 5' -53.4 NC_003387.1 + 6873 0.67 0.735529
Target:  5'- ---aCAAgacgccgGUCGCCGUCGugGCAc-- -3'
miRNA:   3'- cacaGUUa------CAGCGGCAGCugCGUcag -5'
12851 5' -53.4 NC_003387.1 + 28334 0.67 0.723693
Target:  5'- -cGUCGAUG-CGCCGcuguacgUCGGCGCGaaagauguucauGUCg -3'
miRNA:   3'- caCAGUUACaGCGGC-------AGCUGCGU------------CAG- -5'
12851 5' -53.4 NC_003387.1 + 22669 0.67 0.713923
Target:  5'- -cGUCAggGcgCGCuCGUgGGCGguGUCg -3'
miRNA:   3'- caCAGUuaCa-GCG-GCAgCUGCguCAG- -5'
12851 5' -53.4 NC_003387.1 + 15812 0.67 0.709559
Target:  5'- gGUGcCGcUGUCGCCGccgguugugacgcCGACGCGGUg -3'
miRNA:   3'- -CACaGUuACAGCGGCa------------GCUGCGUCAg -5'
12851 5' -53.4 NC_003387.1 + 26678 0.68 0.691984
Target:  5'- uGUGguacUCGAUGUgcggCGCCGUCGGCG-GGUUg -3'
miRNA:   3'- -CAC----AGUUACA----GCGGCAGCUGCgUCAG- -5'
12851 5' -53.4 NC_003387.1 + 15688 0.68 0.680919
Target:  5'- -cGUCAGUGUCGCCGUgccCGGC-CAu-- -3'
miRNA:   3'- caCAGUUACAGCGGCA---GCUGcGUcag -5'
12851 5' -53.4 NC_003387.1 + 47912 0.68 0.669806
Target:  5'- -cGUCGAacgacuugccguUGUgGCCGUCGcCGCGGg- -3'
miRNA:   3'- caCAGUU------------ACAgCGGCAGCuGCGUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.