miRNA display CGI


Results 21 - 40 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12852 3' -55.4 NC_003387.1 + 33246 0.66 0.698878
Target:  5'- --aCGUAcGUGCUCGACGacguccUGCC-CGGCc -3'
miRNA:   3'- ccaGCGU-CACGAGCUGC------AUGGcGUCG- -5'
12852 3' -55.4 NC_003387.1 + 46503 0.66 0.698878
Target:  5'- aGGUguucCGCAGcucGCUCGGCG-ACUGCAccaacgGCg -3'
miRNA:   3'- -CCA----GCGUCa--CGAGCUGCaUGGCGU------CG- -5'
12852 3' -55.4 NC_003387.1 + 46171 0.66 0.698878
Target:  5'- uGGUgCGCcGUgucccgGCUCGcAUGUAuCUGCAGCg -3'
miRNA:   3'- -CCA-GCGuCA------CGAGC-UGCAU-GGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 28795 0.66 0.688106
Target:  5'- cGGUCGagccagcCGGgcaGCUCGACGacguucagccccucgGCgCGCAGCa -3'
miRNA:   3'- -CCAGC-------GUCa--CGAGCUGCa--------------UG-GCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 20381 0.66 0.688106
Target:  5'- uGUCGUuuAG-GCggCGAUcaGCCGCAGCg -3'
miRNA:   3'- cCAGCG--UCaCGa-GCUGcaUGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 20203 0.66 0.688106
Target:  5'- -cUCGCAcgGC-CgGGCGUGCaCGCAGCg -3'
miRNA:   3'- ccAGCGUcaCGaG-CUGCAUG-GCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 1918 0.67 0.681617
Target:  5'- cGGcCGCGGUGaggUCGAuCGUgcagcgcaugauccgGCCGCGGg -3'
miRNA:   3'- -CCaGCGUCACg--AGCU-GCA---------------UGGCGUCg -5'
12852 3' -55.4 NC_003387.1 + 49229 0.67 0.677281
Target:  5'- cGGUCgaggcggccgaGCGGcUGCUCGAC--GCCGgGGUg -3'
miRNA:   3'- -CCAG-----------CGUC-ACGAGCUGcaUGGCgUCG- -5'
12852 3' -55.4 NC_003387.1 + 18912 0.67 0.677281
Target:  5'- cGUCgGCGGcgcGCUCGACccuaCGCAGCu -3'
miRNA:   3'- cCAG-CGUCa--CGAGCUGcaugGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 47006 0.67 0.677281
Target:  5'- gGGcCGCcuGGUGCUCGACuucauUgGCGGCc -3'
miRNA:   3'- -CCaGCG--UCACGAGCUGcau--GgCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 30911 0.67 0.677281
Target:  5'- uGGUCGCcacggcGUcGCUCGcCGagcUGCCGCcGCg -3'
miRNA:   3'- -CCAGCGu-----CA-CGAGCuGC---AUGGCGuCG- -5'
12852 3' -55.4 NC_003387.1 + 14762 0.67 0.677281
Target:  5'- uGGUCGUugucGUGCUCGACc-GCUGUcucgaacuuGGCg -3'
miRNA:   3'- -CCAGCGu---CACGAGCUGcaUGGCG---------UCG- -5'
12852 3' -55.4 NC_003387.1 + 21407 0.67 0.677281
Target:  5'- --cCGCAGUGCUUGGCuacuuaguggGUagACCGCucaAGCu -3'
miRNA:   3'- ccaGCGUCACGAGCUG----------CA--UGGCG---UCG- -5'
12852 3' -55.4 NC_003387.1 + 41135 0.67 0.666414
Target:  5'- aGUgGCAGcGCgcCGACG-GCCGCuGCg -3'
miRNA:   3'- cCAgCGUCaCGa-GCUGCaUGGCGuCG- -5'
12852 3' -55.4 NC_003387.1 + 33991 0.67 0.666414
Target:  5'- gGGUCGCGGUcgaCGACGaGCUGCcuGCu -3'
miRNA:   3'- -CCAGCGUCAcgaGCUGCaUGGCGu-CG- -5'
12852 3' -55.4 NC_003387.1 + 35414 0.67 0.666414
Target:  5'- aGGUCaGCGGUGUgaUUGGCGgauUCGcCGGCu -3'
miRNA:   3'- -CCAG-CGUCACG--AGCUGCau-GGC-GUCG- -5'
12852 3' -55.4 NC_003387.1 + 6839 0.67 0.666414
Target:  5'- aGGUCGaucgcccGCUCGgccGCGgcgcgcaGCCGCAGCa -3'
miRNA:   3'- -CCAGCguca---CGAGC---UGCa------UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 12204 0.67 0.655515
Target:  5'- aGGUCGCugcucGGUGCcgggccacCGGCGgucGCCagcGCAGCg -3'
miRNA:   3'- -CCAGCG-----UCACGa-------GCUGCa--UGG---CGUCG- -5'
12852 3' -55.4 NC_003387.1 + 51308 0.67 0.655515
Target:  5'- aGGaUCGCucggGC-CGACGU-CCGguGCg -3'
miRNA:   3'- -CC-AGCGuca-CGaGCUGCAuGGCguCG- -5'
12852 3' -55.4 NC_003387.1 + 41182 0.67 0.655515
Target:  5'- cGGUCGCAccGuUUCGGCGgcgugcacUACCGCuGCc -3'
miRNA:   3'- -CCAGCGUcaC-GAGCUGC--------AUGGCGuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.