Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12852 | 5' | -56.1 | NC_003387.1 | + | 26718 | 0.72 | 0.340666 |
Target: 5'- cGuGCGCGG-CG-CGAGCUgGAUCGCg -3' miRNA: 3'- aCcCGCGCCaGCaGCUUGAgCUAGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 24881 | 0.7 | 0.429047 |
Target: 5'- gUGGcGcCGCGGcUGUCGAACUCGAcCGa -3' miRNA: 3'- -ACC-C-GCGCCaGCAGCUUGAGCUaGUg -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 24155 | 0.68 | 0.519078 |
Target: 5'- aGGGCGUcGUCGacggCGAucgccgcCUCGGUCGCc -3' miRNA: 3'- aCCCGCGcCAGCa---GCUu------GAGCUAGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 22673 | 0.68 | 0.529568 |
Target: 5'- aGGGCGCGcUCGUgggCGGugUCGAcgGCg -3' miRNA: 3'- aCCCGCGCcAGCA---GCUugAGCUagUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 20177 | 0.67 | 0.637479 |
Target: 5'- aGGGCGCGGUUGaugCGcuGCUgCGccUCGCa -3' miRNA: 3'- aCCCGCGCCAGCa--GCu-UGA-GCu-AGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 19630 | 0.68 | 0.540133 |
Target: 5'- aGGGCGCGa-CGggCG-GCUCGAUCAg -3' miRNA: 3'- aCCCGCGCcaGCa-GCuUGAGCUAGUg -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 19207 | 0.69 | 0.498355 |
Target: 5'- gUGcGGCaccuuGCuGG-CGUUGAACUUGAUCACg -3' miRNA: 3'- -AC-CCG-----CG-CCaGCAGCUUGAGCUAGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 19145 | 0.69 | 0.498355 |
Target: 5'- cGGGCgGUGGcUCGUCGAcGCugUCGAgggCGCg -3' miRNA: 3'- aCCCG-CGCC-AGCAGCU-UG--AGCUa--GUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 18721 | 0.79 | 0.112859 |
Target: 5'- aGGGCGCGGcacUCGUCGAGCagCGGgcagCGCa -3' miRNA: 3'- aCCCGCGCC---AGCAGCUUGa-GCUa---GUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 16993 | 0.7 | 0.438606 |
Target: 5'- cGGGCGauuUCGUCcAGCUCGGUCAg -3' miRNA: 3'- aCCCGCgccAGCAGcUUGAGCUAGUg -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 16322 | 0.66 | 0.648392 |
Target: 5'- -cGGCGcCGGU-GUCGAugUUGAcCGCg -3' miRNA: 3'- acCCGC-GCCAgCAGCUugAGCUaGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 15633 | 0.66 | 0.681003 |
Target: 5'- aGGGCGCGcaCGgCGAGgUCGAcCAUg -3' miRNA: 3'- aCCCGCGCcaGCaGCUUgAGCUaGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 15421 | 0.67 | 0.637479 |
Target: 5'- -cGGCGCGGUCGaCGAccGCgccgaCGAgCGCg -3' miRNA: 3'- acCCGCGCCAGCaGCU--UGa----GCUaGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 14322 | 0.7 | 0.429047 |
Target: 5'- cGGG-GUGGUUGUCGAGgUCGAggUCGu -3' miRNA: 3'- aCCCgCGCCAGCAGCUUgAGCU--AGUg -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 14183 | 0.66 | 0.681002 |
Target: 5'- cGGGCGUGagggcGUCGUgauggcgcgCGAGCUUGAggGCg -3' miRNA: 3'- aCCCGCGC-----CAGCA---------GCUUGAGCUagUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 13770 | 0.73 | 0.287081 |
Target: 5'- gGGGC-CGGUCGguaUGGACcCGGUCGCg -3' miRNA: 3'- aCCCGcGCCAGCa--GCUUGaGCUAGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 12424 | 0.7 | 0.458081 |
Target: 5'- gGcGGCGCuugccGUCGUCGucCUCGAUCGa -3' miRNA: 3'- aC-CCGCGc----CAGCAGCuuGAGCUAGUg -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 12303 | 0.66 | 0.670164 |
Target: 5'- cGGGC-CGGUucgcCGUCGccGACguaGGUCACg -3' miRNA: 3'- aCCCGcGCCA----GCAGC--UUGag-CUAGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 11681 | 0.85 | 0.043974 |
Target: 5'- cGGGCugauuaucgccGCGGUCGUCGGGCUCGcuGUCGCg -3' miRNA: 3'- aCCCG-----------CGCCAGCAGCUUGAGC--UAGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 11423 | 0.66 | 0.65929 |
Target: 5'- cGaGGUGCuGUCGUCGGuGCUCGugccCGCg -3' miRNA: 3'- aC-CCGCGcCAGCAGCU-UGAGCua--GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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