miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12852 5' -56.1 NC_003387.1 + 45230 0.67 0.637478
Target:  5'- cGuGGCGUGGUCGgagUCGAuggGCUgGA-CGCg -3'
miRNA:   3'- aC-CCGCGCCAGC---AGCU---UGAgCUaGUG- -5'
12852 5' -56.1 NC_003387.1 + 35162 0.67 0.636387
Target:  5'- gGGGCGuuGUCGcccuugucacccuUCGGGC-CGAUCAg -3'
miRNA:   3'- aCCCGCgcCAGC-------------AGCUUGaGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 33392 0.67 0.626561
Target:  5'- aGGuucucgcCGCGcUCGUCGcuguACUCGGUCACg -3'
miRNA:   3'- aCCc------GCGCcAGCAGCu---UGAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 6141 0.67 0.615648
Target:  5'- aGGGCGCcacugugagGGUCGgCGuAGC-CGAUCAg -3'
miRNA:   3'- aCCCGCG---------CCAGCaGC-UUGaGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 48263 0.67 0.605838
Target:  5'- cGGGCucgGCGGUCGgcucggccuucggcgCGGGCUCGGcgaACg -3'
miRNA:   3'- aCCCG---CGCCAGCa--------------GCUUGAGCUag-UG- -5'
12852 5' -56.1 NC_003387.1 + 1445 0.68 0.572225
Target:  5'- aGGGCucGgGGUCGUCGucCUCG-UCGa -3'
miRNA:   3'- aCCCG--CgCCAGCAGCuuGAGCuAGUg -5'
12852 5' -56.1 NC_003387.1 + 6089 0.68 0.572225
Target:  5'- cGGG-GC-GUCGUCGGcagGCUCGAaCACc -3'
miRNA:   3'- aCCCgCGcCAGCAGCU---UGAGCUaGUG- -5'
12852 5' -56.1 NC_003387.1 + 50898 0.68 0.572225
Target:  5'- gGGGCGUcGaCGUCGAggGCaUGGUCACg -3'
miRNA:   3'- aCCCGCGcCaGCAGCU--UGaGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 45242 0.68 0.55077
Target:  5'- cGGGUGCGGgugCG-CGG-CUCGGugaUCGCc -3'
miRNA:   3'- aCCCGCGCCa--GCaGCUuGAGCU---AGUG- -5'
12852 5' -56.1 NC_003387.1 + 124 0.68 0.540134
Target:  5'- aGGGCGUGuUUGcUGAGCUCGcUCGCc -3'
miRNA:   3'- aCCCGCGCcAGCaGCUUGAGCuAGUG- -5'
12852 5' -56.1 NC_003387.1 + 19630 0.68 0.540133
Target:  5'- aGGGCGCGa-CGggCG-GCUCGAUCAg -3'
miRNA:   3'- aCCCGCGCcaGCa-GCuUGAGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 22673 0.68 0.529568
Target:  5'- aGGGCGCGcUCGUgggCGGugUCGAcgGCg -3'
miRNA:   3'- aCCCGCGCcAGCA---GCUugAGCUagUG- -5'
12852 5' -56.1 NC_003387.1 + 3618 0.68 0.529568
Target:  5'- cGGGUGCGcGUCGagGuGCUCGAcuUCGu -3'
miRNA:   3'- aCCCGCGC-CAGCagCuUGAGCU--AGUg -5'
12852 5' -56.1 NC_003387.1 + 5927 0.68 0.529568
Target:  5'- --aGCGCGGgcCGUCGAACaccuucUCGAUCAg -3'
miRNA:   3'- accCGCGCCa-GCAGCUUG------AGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 39247 0.68 0.529567
Target:  5'- cGGGCGaGGcCGUCGAGUUCGAccUCGg -3'
miRNA:   3'- aCCCGCgCCaGCAGCUUGAGCU--AGUg -5'
12852 5' -56.1 NC_003387.1 + 24155 0.68 0.519078
Target:  5'- aGGGCGUcGUCGacggCGAucgccgcCUCGGUCGCc -3'
miRNA:   3'- aCCCGCGcCAGCa---GCUu------GAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 19145 0.69 0.498355
Target:  5'- cGGGCgGUGGcUCGUCGAcGCugUCGAgggCGCg -3'
miRNA:   3'- aCCCG-CGCC-AGCAGCU-UG--AGCUa--GUG- -5'
12852 5' -56.1 NC_003387.1 + 19207 0.69 0.498355
Target:  5'- gUGcGGCaccuuGCuGG-CGUUGAACUUGAUCACg -3'
miRNA:   3'- -AC-CCG-----CG-CCaGCAGCUUGAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 45144 0.69 0.478009
Target:  5'- cGaGGCGCGG-CGcUCGGAggUGGUCGCg -3'
miRNA:   3'- aC-CCGCGCCaGC-AGCUUgaGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 6831 0.69 0.478009
Target:  5'- cGGGCGgcaGGUCGaUCGcccGCUCGGcCGCg -3'
miRNA:   3'- aCCCGCg--CCAGC-AGCu--UGAGCUaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.