miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12853 5' -60.9 NC_003387.1 + 48879 0.66 0.396532
Target:  5'- cUGCGuguuuGCUGGGCcaccgcgaaaucGCCUGCgAGCuGCGCg -3'
miRNA:   3'- cAUGCu----CGGCCCG------------UGGGCG-UCG-UGCG- -5'
12853 5' -60.9 NC_003387.1 + 48777 0.66 0.432861
Target:  5'- -cGCGAccaCCGGGUcguUCUGCAGCAgCGCc -3'
miRNA:   3'- caUGCUc--GGCCCGu--GGGCGUCGU-GCG- -5'
12853 5' -60.9 NC_003387.1 + 48552 0.69 0.265499
Target:  5'- aUACGAGCCGuugcggucuGGCACCgccagGCA-CACGCa -3'
miRNA:   3'- cAUGCUCGGC---------CCGUGGg----CGUcGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 48411 0.66 0.418095
Target:  5'- -gGCGuugagccacuGCCGGGUcgcggugcgcugcucGCCCGCGGCcuccauCGCc -3'
miRNA:   3'- caUGCu---------CGGCCCG---------------UGGGCGUCGu-----GCG- -5'
12853 5' -60.9 NC_003387.1 + 48395 0.69 0.272134
Target:  5'- -aGCGGGCCGGGCGCagccugggcaaCCaGUGGUACaGCc -3'
miRNA:   3'- caUGCUCGGCCCGUG-----------GG-CGUCGUG-CG- -5'
12853 5' -60.9 NC_003387.1 + 48340 0.67 0.370607
Target:  5'- -cGCGAGUaucaGGaGCACcuggCCGCcgAGCGCGCc -3'
miRNA:   3'- caUGCUCGg---CC-CGUG----GGCG--UCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 48243 0.67 0.345864
Target:  5'- -cGCGGGCUcGGCcUUCGCGGCGgGCu -3'
miRNA:   3'- caUGCUCGGcCCGuGGGCGUCGUgCG- -5'
12853 5' -60.9 NC_003387.1 + 48096 0.67 0.353978
Target:  5'- -gGCGcuGCCGcuGCGCCCGCGGUggcuCGCc -3'
miRNA:   3'- caUGCu-CGGCc-CGUGGGCGUCGu---GCG- -5'
12853 5' -60.9 NC_003387.1 + 48039 0.68 0.322327
Target:  5'- cGUGCGGGCaCGGcaagcaguuCACCCGCuacCGCGCc -3'
miRNA:   3'- -CAUGCUCG-GCCc--------GUGGGCGuc-GUGCG- -5'
12853 5' -60.9 NC_003387.1 + 46997 0.7 0.21157
Target:  5'- -gACGAGCgCGGGcCGCCUGguGCuCGa -3'
miRNA:   3'- caUGCUCG-GCCC-GUGGGCguCGuGCg -5'
12853 5' -60.9 NC_003387.1 + 46930 0.79 0.054272
Target:  5'- --uUGAGCCGGGCACcgaggugucgauCCGCGGCgaGCGCg -3'
miRNA:   3'- cauGCUCGGCCCGUG------------GGCGUCG--UGCG- -5'
12853 5' -60.9 NC_003387.1 + 46333 0.66 0.40543
Target:  5'- -aGCgGGGCCGcccacgcaaGGCgucGCCCGCGGCcgaggccaaGCGCg -3'
miRNA:   3'- caUG-CUCGGC---------CCG---UGGGCGUCG---------UGCG- -5'
12853 5' -60.9 NC_003387.1 + 46280 0.66 0.385155
Target:  5'- -gGCGAcGCCGcccacgaccucgacGGCcugGCCCGCAGuCACcGCg -3'
miRNA:   3'- caUGCU-CGGC--------------CCG---UGGGCGUC-GUG-CG- -5'
12853 5' -60.9 NC_003387.1 + 46122 0.66 0.422677
Target:  5'- -aACGAGucgucgcggaacaCCGGGUugCCGUucGCGuCGCg -3'
miRNA:   3'- caUGCUC-------------GGCCCGugGGCGu-CGU-GCG- -5'
12853 5' -60.9 NC_003387.1 + 46005 0.68 0.314752
Target:  5'- -gGCGAGUCGacGGUgaacuGCCCGCGGUgcaagACGCc -3'
miRNA:   3'- caUGCUCGGC--CCG-----UGGGCGUCG-----UGCG- -5'
12853 5' -60.9 NC_003387.1 + 45766 0.66 0.396532
Target:  5'- -gGCGcGCUGuGGCGCCUGCccgccGCuGCGCa -3'
miRNA:   3'- caUGCuCGGC-CCGUGGGCGu----CG-UGCG- -5'
12853 5' -60.9 NC_003387.1 + 45686 0.67 0.345864
Target:  5'- -aGCG-GCCGGGcCugCCGUugaACGCg -3'
miRNA:   3'- caUGCuCGGCCC-GugGGCGucgUGCG- -5'
12853 5' -60.9 NC_003387.1 + 45504 0.71 0.200943
Target:  5'- uUGCGucGGCCGGGUcaGCaCCGCGGCcaccauugACGCc -3'
miRNA:   3'- cAUGC--UCGGCCCG--UG-GGCGUCG--------UGCG- -5'
12853 5' -60.9 NC_003387.1 + 44898 0.74 0.1118
Target:  5'- cUGCGcGCCGGGCACCU-CGGC-CGCc -3'
miRNA:   3'- cAUGCuCGGCCCGUGGGcGUCGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 44884 0.68 0.307312
Target:  5'- --cCGAGCUGacGCAgCCGCcgGGCGCGCu -3'
miRNA:   3'- cauGCUCGGCc-CGUgGGCG--UCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.