miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12853 5' -60.9 NC_003387.1 + 13005 0.66 0.414452
Target:  5'- -gGCGucGUCGGGCaaggucgacagcGCCCGCAcgucGCuGCGCa -3'
miRNA:   3'- caUGCu-CGGCCCG------------UGGGCGU----CG-UGCG- -5'
12853 5' -60.9 NC_003387.1 + 38087 0.66 0.414452
Target:  5'- uGUGCGcggcGGCCugacGGGCACCUGCGaccuuuacGaCACGUg -3'
miRNA:   3'- -CAUGC----UCGG----CCCGUGGGCGU--------C-GUGCG- -5'
12853 5' -60.9 NC_003387.1 + 22933 0.66 0.414452
Target:  5'- -aGCGGcGCCGGauaCACgCGCAGCugacCGCg -3'
miRNA:   3'- caUGCU-CGGCCc--GUGgGCGUCGu---GCG- -5'
12853 5' -60.9 NC_003387.1 + 37045 0.66 0.414452
Target:  5'- -cACGcGCCGGGauucauCACCUGCgugGGCAaCGCc -3'
miRNA:   3'- caUGCuCGGCCC------GUGGGCG---UCGU-GCG- -5'
12853 5' -60.9 NC_003387.1 + 41104 0.66 0.413544
Target:  5'- -cGCGAGCUGcuGGCGCugcacgaCCggaucaagugGCAGCGCGCc -3'
miRNA:   3'- caUGCUCGGC--CCGUG-------GG----------CGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 52334 0.66 0.413544
Target:  5'- gGUGCGAGUgcacucgacgagaUGGGCGCggaaCCGCu-CGCGCa -3'
miRNA:   3'- -CAUGCUCG-------------GCCCGUG----GGCGucGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 29599 0.66 0.409024
Target:  5'- ---gGAGCCGGGCgACUaugucggguaucaguCGguGCACcGCa -3'
miRNA:   3'- caugCUCGGCCCG-UGG---------------GCguCGUG-CG- -5'
12853 5' -60.9 NC_003387.1 + 51560 0.66 0.40543
Target:  5'- cUACcgcuGCCGcuaaGCACCgCGCAuGCACGCa -3'
miRNA:   3'- cAUGcu--CGGCc---CGUGG-GCGU-CGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 32284 0.66 0.40543
Target:  5'- cGUGgGGGCgcgaGGaGCACCgGCGGC-UGCa -3'
miRNA:   3'- -CAUgCUCGg---CC-CGUGGgCGUCGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 46333 0.66 0.40543
Target:  5'- -aGCgGGGCCGcccacgcaaGGCgucGCCCGCGGCcgaggccaaGCGCg -3'
miRNA:   3'- caUG-CUCGGC---------CCG---UGGGCGUCG---------UGCG- -5'
12853 5' -60.9 NC_003387.1 + 10424 0.66 0.40543
Target:  5'- aGUACGGcucgcggcugucGgCGGGCA-UCGaCAGCGCGCu -3'
miRNA:   3'- -CAUGCU------------CgGCCCGUgGGC-GUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 6948 0.66 0.40543
Target:  5'- gGUGCGuGa-GGGCACCCuGCuGGC-CGCc -3'
miRNA:   3'- -CAUGCuCggCCCGUGGG-CG-UCGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 51162 0.66 0.40543
Target:  5'- -gACGGG--GGGCGCCgGUAuGCACGUa -3'
miRNA:   3'- caUGCUCggCCCGUGGgCGU-CGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 49346 0.66 0.40543
Target:  5'- -aGCuGAGCguCGGGUACagcaCCGUGGUGCGCa -3'
miRNA:   3'- caUG-CUCG--GCCCGUG----GGCGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 30204 0.66 0.40543
Target:  5'- --cCGAGCCGGuaCGCCgaCGUcgAGCGCGCc -3'
miRNA:   3'- cauGCUCGGCCc-GUGG--GCG--UCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 50945 0.66 0.40543
Target:  5'- uUGCGGGCuuucagcuCGGGCGCCagCGCcGC-CGCc -3'
miRNA:   3'- cAUGCUCG--------GCCCGUGG--GCGuCGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 15755 0.66 0.40543
Target:  5'- -cAUGAuCgGGGCguacaGCCUGCGGUugGCg -3'
miRNA:   3'- caUGCUcGgCCCG-----UGGGCGUCGugCG- -5'
12853 5' -60.9 NC_003387.1 + 45766 0.66 0.396532
Target:  5'- -gGCGcGCUGuGGCGCCUGCccgccGCuGCGCa -3'
miRNA:   3'- caUGCuCGGC-CCGUGGGCGu----CG-UGCG- -5'
12853 5' -60.9 NC_003387.1 + 19411 0.66 0.396532
Target:  5'- cGUGCGGGCCuugaugccaaGGGC-CuuGCA-CACGUc -3'
miRNA:   3'- -CAUGCUCGG----------CCCGuGggCGUcGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 48879 0.66 0.396532
Target:  5'- cUGCGuguuuGCUGGGCcaccgcgaaaucGCCUGCgAGCuGCGCg -3'
miRNA:   3'- cAUGCu----CGGCCCG------------UGGGCG-UCG-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.