miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12854 3' -59.7 NC_003387.1 + 46883 0.66 0.464053
Target:  5'- cGCCCccaccugcgGCGCAgcccgGGUCgucgUGCACGGCCg- -3'
miRNA:   3'- uCGGG---------CGUGUa----CUAG----GCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 19177 0.66 0.464053
Target:  5'- cGGCCCGCACGg---UCGCuaACGGCa-- -3'
miRNA:   3'- -UCGGGCGUGUacuaGGCG--UGCCGgac -5'
12854 3' -59.7 NC_003387.1 + 35469 0.66 0.46111
Target:  5'- cAGUCCGCGagGUGA-CCGCgugagugacagcaaGCGGCCg- -3'
miRNA:   3'- -UCGGGCGUg-UACUaGGCG--------------UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 23390 0.66 0.454283
Target:  5'- aAGCgCGCgGCGgcuuUCaGCGCGGCCUGg -3'
miRNA:   3'- -UCGgGCG-UGUacu-AGgCGUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 51574 0.66 0.454283
Target:  5'- aAGCaCCGCGCAUGca-CGCAgGcGCCg- -3'
miRNA:   3'- -UCG-GGCGUGUACuagGCGUgC-CGGac -5'
12854 3' -59.7 NC_003387.1 + 38626 0.66 0.444626
Target:  5'- cGGCCCGCA---GG-CCGCGCuGGCgCUGc -3'
miRNA:   3'- -UCGGGCGUguaCUaGGCGUG-CCG-GAC- -5'
12854 3' -59.7 NC_003387.1 + 30546 0.66 0.444626
Target:  5'- cGCCCcgACAUGGaccgCCGcCGCGGCCg- -3'
miRNA:   3'- uCGGGcgUGUACUa---GGC-GUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 13029 0.66 0.435086
Target:  5'- cGCCCGCACGUcg-CUGCGCaacGCCg- -3'
miRNA:   3'- uCGGGCGUGUAcuaGGCGUGc--CGGac -5'
12854 3' -59.7 NC_003387.1 + 43190 0.66 0.435086
Target:  5'- cGGCuuGCGCAggcaCCGCuugACGGCCa- -3'
miRNA:   3'- -UCGggCGUGUacuaGGCG---UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 48162 0.66 0.435086
Target:  5'- aGGCCCGCGCGg---UCGCGCaGGCg-- -3'
miRNA:   3'- -UCGGGCGUGUacuaGGCGUG-CCGgac -5'
12854 3' -59.7 NC_003387.1 + 27144 0.66 0.435086
Target:  5'- uGCCCGC-CggGGUCgGCGCcGCCg- -3'
miRNA:   3'- uCGGGCGuGuaCUAGgCGUGcCGGac -5'
12854 3' -59.7 NC_003387.1 + 24396 0.66 0.425664
Target:  5'- cGCCCgGCAgGcUGAUCUGCACGcCCg- -3'
miRNA:   3'- uCGGG-CGUgU-ACUAGGCGUGCcGGac -5'
12854 3' -59.7 NC_003387.1 + 34351 0.67 0.416366
Target:  5'- uGCCguCGUuguagagguugACGuUGAUCUGCGCGGUCUGa -3'
miRNA:   3'- uCGG--GCG-----------UGU-ACUAGGCGUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 48186 0.67 0.416366
Target:  5'- aGGCCCGCAagGUGc-CCGCaccggcggcgGCGGCCg- -3'
miRNA:   3'- -UCGGGCGUg-UACuaGGCG----------UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 12441 0.67 0.416366
Target:  5'- gGGCgCUGC-CGaGGUUCGCuggcgGCGGCCUGg -3'
miRNA:   3'- -UCG-GGCGuGUaCUAGGCG-----UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 6426 0.67 0.398147
Target:  5'- cGGCCCGC---UGcgCCGCcugcuCGGCCUc -3'
miRNA:   3'- -UCGGGCGuguACuaGGCGu----GCCGGAc -5'
12854 3' -59.7 NC_003387.1 + 10728 0.67 0.398147
Target:  5'- cGGCCC-CACcgcuUGAgcaCCGCGgCGGCCUc -3'
miRNA:   3'- -UCGGGcGUGu---ACUa--GGCGU-GCCGGAc -5'
12854 3' -59.7 NC_003387.1 + 29405 0.67 0.380447
Target:  5'- cGCCCGCcgggcGCAggagGAggccgCCGCAgCGGCCc- -3'
miRNA:   3'- uCGGGCG-----UGUa---CUa----GGCGU-GCCGGac -5'
12854 3' -59.7 NC_003387.1 + 27247 0.67 0.380447
Target:  5'- cGCCCGacaGgAUGcgCCGCAUGaGCCg- -3'
miRNA:   3'- uCGGGCg--UgUACuaGGCGUGC-CGGac -5'
12854 3' -59.7 NC_003387.1 + 40439 0.67 0.371797
Target:  5'- cGGCCCGCugAUccggCCGC-CGGUCg- -3'
miRNA:   3'- -UCGGGCGugUAcua-GGCGuGCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.