Results 41 - 60 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 17570 | 0.68 | 0.33059 |
Target: 5'- cAGCCCGCccuCGcUGGUgUCGUGCGGCCa- -3' miRNA: 3'- -UCGGGCGu--GU-ACUA-GGCGUGCCGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 29405 | 0.67 | 0.380447 |
Target: 5'- cGCCCGCcgggcGCAggagGAggccgCCGCAgCGGCCc- -3' miRNA: 3'- uCGGGCG-----UGUa---CUa----GGCGU-GCCGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 12441 | 0.67 | 0.416366 |
Target: 5'- gGGCgCUGC-CGaGGUUCGCuggcgGCGGCCUGg -3' miRNA: 3'- -UCG-GGCGuGUaCUAGGCG-----UGCCGGAC- -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 48186 | 0.67 | 0.416366 |
Target: 5'- aGGCCCGCAagGUGc-CCGCaccggcggcgGCGGCCg- -3' miRNA: 3'- -UCGGGCGUg-UACuaGGCG----------UGCCGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 27247 | 0.67 | 0.380447 |
Target: 5'- cGCCCGacaGgAUGcgCCGCAUGaGCCg- -3' miRNA: 3'- uCGGGCg--UgUACuaGGCGUGC-CGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 34351 | 0.67 | 0.416366 |
Target: 5'- uGCCguCGUuguagagguugACGuUGAUCUGCGCGGUCUGa -3' miRNA: 3'- uCGG--GCG-----------UGU-ACUAGGCGUGCCGGAC- -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 10728 | 0.67 | 0.398147 |
Target: 5'- cGGCCC-CACcgcuUGAgcaCCGCGgCGGCCUc -3' miRNA: 3'- -UCGGGcGUGu---ACUa--GGCGU-GCCGGAc -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 6426 | 0.67 | 0.398147 |
Target: 5'- cGGCCCGC---UGcgCCGCcugcuCGGCCUc -3' miRNA: 3'- -UCGGGCGuguACuaGGCGu----GCCGGAc -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 40439 | 0.67 | 0.371797 |
Target: 5'- cGGCCCGCugAUccggCCGC-CGGUCg- -3' miRNA: 3'- -UCGGGCGugUAcua-GGCGuGCCGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 19177 | 0.66 | 0.464053 |
Target: 5'- cGGCCCGCACGg---UCGCuaACGGCa-- -3' miRNA: 3'- -UCGGGCGUGUacuaGGCG--UGCCGgac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 35469 | 0.66 | 0.46111 |
Target: 5'- cAGUCCGCGagGUGA-CCGCgugagugacagcaaGCGGCCg- -3' miRNA: 3'- -UCGGGCGUg-UACUaGGCG--------------UGCCGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 51574 | 0.66 | 0.454283 |
Target: 5'- aAGCaCCGCGCAUGca-CGCAgGcGCCg- -3' miRNA: 3'- -UCG-GGCGUGUACuagGCGUgC-CGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 38626 | 0.66 | 0.444626 |
Target: 5'- cGGCCCGCA---GG-CCGCGCuGGCgCUGc -3' miRNA: 3'- -UCGGGCGUguaCUaGGCGUG-CCG-GAC- -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 30546 | 0.66 | 0.444626 |
Target: 5'- cGCCCcgACAUGGaccgCCGcCGCGGCCg- -3' miRNA: 3'- uCGGGcgUGUACUa---GGC-GUGCCGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 48162 | 0.66 | 0.435086 |
Target: 5'- aGGCCCGCGCGg---UCGCGCaGGCg-- -3' miRNA: 3'- -UCGGGCGUGUacuaGGCGUG-CCGgac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 13029 | 0.66 | 0.435086 |
Target: 5'- cGCCCGCACGUcg-CUGCGCaacGCCg- -3' miRNA: 3'- uCGGGCGUGUAcuaGGCGUGc--CGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 43190 | 0.66 | 0.435086 |
Target: 5'- cGGCuuGCGCAggcaCCGCuugACGGCCa- -3' miRNA: 3'- -UCGggCGUGUacuaGGCG---UGCCGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 27144 | 0.66 | 0.435086 |
Target: 5'- uGCCCGC-CggGGUCgGCGCcGCCg- -3' miRNA: 3'- uCGGGCGuGuaCUAGgCGUGcCGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 24396 | 0.66 | 0.425664 |
Target: 5'- cGCCCgGCAgGcUGAUCUGCACGcCCg- -3' miRNA: 3'- uCGGG-CGUgU-ACUAGGCGUGCcGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 23390 | 0.66 | 0.454283 |
Target: 5'- aAGCgCGCgGCGgcuuUCaGCGCGGCCUGg -3' miRNA: 3'- -UCGgGCG-UGUacu-AGgCGUGCCGGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home