miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12854 3' -59.7 NC_003387.1 + 12930 0.68 0.363281
Target:  5'- aAGCCUGCGCAaucaggCCGC-UGGCCUc -3'
miRNA:   3'- -UCGGGCGUGUacua--GGCGuGCCGGAc -5'
12854 3' -59.7 NC_003387.1 + 38073 0.68 0.354902
Target:  5'- gAGCgCCGCGuCAcuGUgCGCgGCGGCCUGa -3'
miRNA:   3'- -UCG-GGCGU-GUacUAgGCG-UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 26806 0.68 0.354902
Target:  5'- aGGCCgCGCugGUGGUCgGUgaGCGcGCCg- -3'
miRNA:   3'- -UCGG-GCGugUACUAGgCG--UGC-CGGac -5'
12854 3' -59.7 NC_003387.1 + 1792 0.68 0.354902
Target:  5'- aAGCCCGCAagguCAaggugaagcUGAcCgGCGCGGCCg- -3'
miRNA:   3'- -UCGGGCGU----GU---------ACUaGgCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 138 0.68 0.34666
Target:  5'- cGCCCuCGC--GAUCCGCGCcgccgagcugGGCCUGc -3'
miRNA:   3'- uCGGGcGUGuaCUAGGCGUG----------CCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 4173 0.68 0.34666
Target:  5'- cGCCUgGCACGUGAccUCgGCGCGGUg-- -3'
miRNA:   3'- uCGGG-CGUGUACU--AGgCGUGCCGgac -5'
12854 3' -59.7 NC_003387.1 + 1939 0.68 0.338556
Target:  5'- uGCa-GCGCAUGAUCCGgcCGCgGGUCUGg -3'
miRNA:   3'- uCGggCGUGUACUAGGC--GUG-CCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 31607 0.68 0.338556
Target:  5'- uGGCCCGCcucgguauuCGUGA-CCGCACcGcCCUGg -3'
miRNA:   3'- -UCGGGCGu--------GUACUaGGCGUGcC-GGAC- -5'
12854 3' -59.7 NC_003387.1 + 52255 0.68 0.338556
Target:  5'- cAGCUCGCGCcgGucgCCGU-CGGCCg- -3'
miRNA:   3'- -UCGGGCGUGuaCua-GGCGuGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 4698 0.68 0.33059
Target:  5'- uGCCCGCACGUG--CCGaucCACGGCg-- -3'
miRNA:   3'- uCGGGCGUGUACuaGGC---GUGCCGgac -5'
12854 3' -59.7 NC_003387.1 + 26126 0.68 0.33059
Target:  5'- aGGUCgGCGCGUccgucgCCGCucgcGCGGCCUGa -3'
miRNA:   3'- -UCGGgCGUGUAcua---GGCG----UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 17570 0.68 0.33059
Target:  5'- cAGCCCGCccuCGcUGGUgUCGUGCGGCCa- -3'
miRNA:   3'- -UCGGGCGu--GU-ACUA-GGCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 15272 0.68 0.33059
Target:  5'- cAGCgCCGCcaGCAUGGcaaCCGUcgGCGGCUUGg -3'
miRNA:   3'- -UCG-GGCG--UGUACUa--GGCG--UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 44797 0.69 0.315076
Target:  5'- uGGCCCGCGC--GAUCCuCgACGGgCUGa -3'
miRNA:   3'- -UCGGGCGUGuaCUAGGcG-UGCCgGAC- -5'
12854 3' -59.7 NC_003387.1 + 47731 0.69 0.307528
Target:  5'- aGGCCCGCAgaauCGcgaccgaccugcUGcgCgaGCACGGCCUGa -3'
miRNA:   3'- -UCGGGCGU----GU------------ACuaGg-CGUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 2370 0.69 0.307527
Target:  5'- cGCCaCGUACGcGGUCaCGUugccgcggGCGGCCUGa -3'
miRNA:   3'- uCGG-GCGUGUaCUAG-GCG--------UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 22993 0.69 0.300118
Target:  5'- cGCCCGCGUAgcugCCGUcguCGGCCUGg -3'
miRNA:   3'- uCGGGCGUGUacuaGGCGu--GCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 32323 0.69 0.292848
Target:  5'- uGCCCG-ACAUGGaCCGCuGCGGCUg- -3'
miRNA:   3'- uCGGGCgUGUACUaGGCG-UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 42477 0.69 0.285715
Target:  5'- gAGCCCGCGC----UCgGCGCGGCUc- -3'
miRNA:   3'- -UCGGGCGUGuacuAGgCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 33267 0.69 0.27872
Target:  5'- cGCCCaCAC-UGAcacgcgcCCGCACGGCCUu -3'
miRNA:   3'- uCGGGcGUGuACUa------GGCGUGCCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.