miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12854 3' -59.7 NC_003387.1 + 31141 0.69 0.27872
Target:  5'- cGGCCuCGCugAUG--CCGCGCG-CCUGg -3'
miRNA:   3'- -UCGG-GCGugUACuaGGCGUGCcGGAC- -5'
12854 3' -59.7 NC_003387.1 + 33267 0.69 0.27872
Target:  5'- cGCCCaCAC-UGAcacgcgcCCGCACGGCCUu -3'
miRNA:   3'- uCGGGcGUGuACUa------GGCGUGCCGGAc -5'
12854 3' -59.7 NC_003387.1 + 45956 0.69 0.27872
Target:  5'- cGGCCCGCGCAagggcgaggcgUGcgCUGUG-GGCCUGu -3'
miRNA:   3'- -UCGGGCGUGU-----------ACuaGGCGUgCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 34314 0.7 0.271863
Target:  5'- cAGCCCGCGCug---CC-CGCGGCCg- -3'
miRNA:   3'- -UCGGGCGUGuacuaGGcGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 17159 0.7 0.265142
Target:  5'- cGGCCCGCGC-UGAgcuggUGCGCcGCCUGg -3'
miRNA:   3'- -UCGGGCGUGuACUag---GCGUGcCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 17780 0.7 0.265141
Target:  5'- gAGCuuGCGCAg---CgGCACGGCCg- -3'
miRNA:   3'- -UCGggCGUGUacuaGgCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 4555 0.7 0.258555
Target:  5'- gGGCCUGCGCcUGcgcgaCCGCGCgGGCCUc -3'
miRNA:   3'- -UCGGGCGUGuACua---GGCGUG-CCGGAc -5'
12854 3' -59.7 NC_003387.1 + 45745 0.7 0.24516
Target:  5'- cGCCUGCACAagUGGUCCgaggGCGCGcuguggcGCCUGc -3'
miRNA:   3'- uCGGGCGUGU--ACUAGG----CGUGC-------CGGAC- -5'
12854 3' -59.7 NC_003387.1 + 1586 0.7 0.239598
Target:  5'- cGCCCugGCggucgACAUG--UCGCACGGCCUGg -3'
miRNA:   3'- uCGGG--CG-----UGUACuaGGCGUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 958 0.71 0.227615
Target:  5'- ---gCGCACcgGAcCCGCACGGCCg- -3'
miRNA:   3'- ucggGCGUGuaCUaGGCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 25867 0.71 0.227615
Target:  5'- uGGCCUGCAguUG--CCGaGCGGCCUGg -3'
miRNA:   3'- -UCGGGCGUguACuaGGCgUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 21780 0.71 0.227615
Target:  5'- cAGCCagcgGCGCAcGAUCUGCgACGGCCc- -3'
miRNA:   3'- -UCGGg---CGUGUaCUAGGCG-UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 12455 0.71 0.221815
Target:  5'- gGGgUCGCGCAgaucGGUCUGCACGGUCa- -3'
miRNA:   3'- -UCgGGCGUGUa---CUAGGCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 34035 0.71 0.221243
Target:  5'- cGaCCCGCACcUGGUCgGCgugugggGCGGCCUa -3'
miRNA:   3'- uC-GGGCGUGuACUAGgCG-------UGCCGGAc -5'
12854 3' -59.7 NC_003387.1 + 51216 0.73 0.149034
Target:  5'- gAGCCUGCAC---GUCgGcCGCGGCCUGg -3'
miRNA:   3'- -UCGGGCGUGuacUAGgC-GUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 15991 0.73 0.149034
Target:  5'- cGGgCCGCACuggcUGGUCCgGUACGGCCg- -3'
miRNA:   3'- -UCgGGCGUGu---ACUAGG-CGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 43672 0.74 0.130057
Target:  5'- aGGCCCGCcuucuGCGcGAUCUGCGCGaCCUGg -3'
miRNA:   3'- -UCGGGCG-----UGUaCUAGGCGUGCcGGAC- -5'
12854 3' -59.7 NC_003387.1 + 49210 0.75 0.123111
Target:  5'- gAGCCCGCAacgGAUCUGCcggucgagGCGGCCg- -3'
miRNA:   3'- -UCGGGCGUguaCUAGGCG--------UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 31513 0.75 0.113334
Target:  5'- cGCCCGCACGcUGuUCCaCGCGGCCa- -3'
miRNA:   3'- uCGGGCGUGU-ACuAGGcGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 8026 0.83 0.030644
Target:  5'- cGGCCCGCugGUGG-CCGCGCGaGCCUa -3'
miRNA:   3'- -UCGGGCGugUACUaGGCGUGC-CGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.