miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12854 3' -59.7 NC_003387.1 + 138 0.68 0.34666
Target:  5'- cGCCCuCGC--GAUCCGCGCcgccgagcugGGCCUGc -3'
miRNA:   3'- uCGGGcGUGuaCUAGGCGUG----------CCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 958 0.71 0.227615
Target:  5'- ---gCGCACcgGAcCCGCACGGCCg- -3'
miRNA:   3'- ucggGCGUGuaCUaGGCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 1586 0.7 0.239598
Target:  5'- cGCCCugGCggucgACAUG--UCGCACGGCCUGg -3'
miRNA:   3'- uCGGG--CG-----UGUACuaGGCGUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 1792 0.68 0.354902
Target:  5'- aAGCCCGCAagguCAaggugaagcUGAcCgGCGCGGCCg- -3'
miRNA:   3'- -UCGGGCGU----GU---------ACUaGgCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 1939 0.68 0.338556
Target:  5'- uGCa-GCGCAUGAUCCGgcCGCgGGUCUGg -3'
miRNA:   3'- uCGggCGUGUACUAGGC--GUG-CCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 2370 0.69 0.307527
Target:  5'- cGCCaCGUACGcGGUCaCGUugccgcggGCGGCCUGa -3'
miRNA:   3'- uCGG-GCGUGUaCUAG-GCG--------UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 4173 0.68 0.34666
Target:  5'- cGCCUgGCACGUGAccUCgGCGCGGUg-- -3'
miRNA:   3'- uCGGG-CGUGUACU--AGgCGUGCCGgac -5'
12854 3' -59.7 NC_003387.1 + 4555 0.7 0.258555
Target:  5'- gGGCCUGCGCcUGcgcgaCCGCGCgGGCCUc -3'
miRNA:   3'- -UCGGGCGUGuACua---GGCGUG-CCGGAc -5'
12854 3' -59.7 NC_003387.1 + 4698 0.68 0.33059
Target:  5'- uGCCCGCACGUG--CCGaucCACGGCg-- -3'
miRNA:   3'- uCGGGCGUGUACuaGGC---GUGCCGgac -5'
12854 3' -59.7 NC_003387.1 + 6426 0.67 0.398147
Target:  5'- cGGCCCGC---UGcgCCGCcugcuCGGCCUc -3'
miRNA:   3'- -UCGGGCGuguACuaGGCGu----GCCGGAc -5'
12854 3' -59.7 NC_003387.1 + 6877 0.69 0.27872
Target:  5'- cAGCUCGCGCAgGAUCUcCGCGGCg-- -3'
miRNA:   3'- -UCGGGCGUGUaCUAGGcGUGCCGgac -5'
12854 3' -59.7 NC_003387.1 + 8026 0.83 0.030644
Target:  5'- cGGCCCGCugGUGG-CCGCGCGaGCCUa -3'
miRNA:   3'- -UCGGGCGugUACUaGGCGUGC-CGGAc -5'
12854 3' -59.7 NC_003387.1 + 10355 1.07 0.000452
Target:  5'- cAGCCCGCACAUGAUCCGCACGGCCUGc -3'
miRNA:   3'- -UCGGGCGUGUACUAGGCGUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 10728 0.67 0.398147
Target:  5'- cGGCCC-CACcgcuUGAgcaCCGCGgCGGCCUc -3'
miRNA:   3'- -UCGGGcGUGu---ACUa--GGCGU-GCCGGAc -5'
12854 3' -59.7 NC_003387.1 + 12441 0.67 0.416366
Target:  5'- gGGCgCUGC-CGaGGUUCGCuggcgGCGGCCUGg -3'
miRNA:   3'- -UCG-GGCGuGUaCUAGGCG-----UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 12455 0.71 0.221815
Target:  5'- gGGgUCGCGCAgaucGGUCUGCACGGUCa- -3'
miRNA:   3'- -UCgGGCGUGUa---CUAGGCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 12930 0.68 0.363281
Target:  5'- aAGCCUGCGCAaucaggCCGC-UGGCCUc -3'
miRNA:   3'- -UCGGGCGUGUacua--GGCGuGCCGGAc -5'
12854 3' -59.7 NC_003387.1 + 13029 0.66 0.435086
Target:  5'- cGCCCGCACGUcg-CUGCGCaacGCCg- -3'
miRNA:   3'- uCGGGCGUGUAcuaGGCGUGc--CGGac -5'
12854 3' -59.7 NC_003387.1 + 15272 0.68 0.33059
Target:  5'- cAGCgCCGCcaGCAUGGcaaCCGUcgGCGGCUUGg -3'
miRNA:   3'- -UCG-GGCG--UGUACUa--GGCG--UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 15991 0.73 0.149034
Target:  5'- cGGgCCGCACuggcUGGUCCgGUACGGCCg- -3'
miRNA:   3'- -UCgGGCGUGu---ACUAGG-CGUGCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.