miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12854 3' -59.7 NC_003387.1 + 17159 0.7 0.265142
Target:  5'- cGGCCCGCGC-UGAgcuggUGCGCcGCCUGg -3'
miRNA:   3'- -UCGGGCGUGuACUag---GCGUGcCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 17570 0.68 0.33059
Target:  5'- cAGCCCGCccuCGcUGGUgUCGUGCGGCCa- -3'
miRNA:   3'- -UCGGGCGu--GU-ACUA-GGCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 17780 0.7 0.265141
Target:  5'- gAGCuuGCGCAg---CgGCACGGCCg- -3'
miRNA:   3'- -UCGggCGUGUacuaGgCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 19177 0.66 0.464053
Target:  5'- cGGCCCGCACGg---UCGCuaACGGCa-- -3'
miRNA:   3'- -UCGGGCGUGUacuaGGCG--UGCCGgac -5'
12854 3' -59.7 NC_003387.1 + 21780 0.71 0.227615
Target:  5'- cAGCCagcgGCGCAcGAUCUGCgACGGCCc- -3'
miRNA:   3'- -UCGGg---CGUGUaCUAGGCG-UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 22993 0.69 0.300118
Target:  5'- cGCCCGCGUAgcugCCGUcguCGGCCUGg -3'
miRNA:   3'- uCGGGCGUGUacuaGGCGu--GCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 23390 0.66 0.454283
Target:  5'- aAGCgCGCgGCGgcuuUCaGCGCGGCCUGg -3'
miRNA:   3'- -UCGgGCG-UGUacu-AGgCGUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 24396 0.66 0.425664
Target:  5'- cGCCCgGCAgGcUGAUCUGCACGcCCg- -3'
miRNA:   3'- uCGGG-CGUgU-ACUAGGCGUGCcGGac -5'
12854 3' -59.7 NC_003387.1 + 25867 0.71 0.227615
Target:  5'- uGGCCUGCAguUG--CCGaGCGGCCUGg -3'
miRNA:   3'- -UCGGGCGUguACuaGGCgUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 26126 0.68 0.33059
Target:  5'- aGGUCgGCGCGUccgucgCCGCucgcGCGGCCUGa -3'
miRNA:   3'- -UCGGgCGUGUAcua---GGCG----UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 26806 0.68 0.354902
Target:  5'- aGGCCgCGCugGUGGUCgGUgaGCGcGCCg- -3'
miRNA:   3'- -UCGG-GCGugUACUAGgCG--UGC-CGGac -5'
12854 3' -59.7 NC_003387.1 + 27144 0.66 0.435086
Target:  5'- uGCCCGC-CggGGUCgGCGCcGCCg- -3'
miRNA:   3'- uCGGGCGuGuaCUAGgCGUGcCGGac -5'
12854 3' -59.7 NC_003387.1 + 27247 0.67 0.380447
Target:  5'- cGCCCGacaGgAUGcgCCGCAUGaGCCg- -3'
miRNA:   3'- uCGGGCg--UgUACuaGGCGUGC-CGGac -5'
12854 3' -59.7 NC_003387.1 + 29405 0.67 0.380447
Target:  5'- cGCCCGCcgggcGCAggagGAggccgCCGCAgCGGCCc- -3'
miRNA:   3'- uCGGGCG-----UGUa---CUa----GGCGU-GCCGGac -5'
12854 3' -59.7 NC_003387.1 + 30546 0.66 0.444626
Target:  5'- cGCCCcgACAUGGaccgCCGcCGCGGCCg- -3'
miRNA:   3'- uCGGGcgUGUACUa---GGC-GUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 31141 0.69 0.27872
Target:  5'- cGGCCuCGCugAUG--CCGCGCG-CCUGg -3'
miRNA:   3'- -UCGG-GCGugUACuaGGCGUGCcGGAC- -5'
12854 3' -59.7 NC_003387.1 + 31513 0.75 0.113334
Target:  5'- cGCCCGCACGcUGuUCCaCGCGGCCa- -3'
miRNA:   3'- uCGGGCGUGU-ACuAGGcGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 31607 0.68 0.338556
Target:  5'- uGGCCCGCcucgguauuCGUGA-CCGCACcGcCCUGg -3'
miRNA:   3'- -UCGGGCGu--------GUACUaGGCGUGcC-GGAC- -5'
12854 3' -59.7 NC_003387.1 + 32323 0.69 0.292848
Target:  5'- uGCCCG-ACAUGGaCCGCuGCGGCUg- -3'
miRNA:   3'- uCGGGCgUGUACUaGGCG-UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 33267 0.69 0.27872
Target:  5'- cGCCCaCAC-UGAcacgcgcCCGCACGGCCUu -3'
miRNA:   3'- uCGGGcGUGuACUa------GGCGUGCCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.