miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12854 3' -59.7 NC_003387.1 + 34035 0.71 0.221243
Target:  5'- cGaCCCGCACcUGGUCgGCgugugggGCGGCCUa -3'
miRNA:   3'- uC-GGGCGUGuACUAGgCG-------UGCCGGAc -5'
12854 3' -59.7 NC_003387.1 + 34314 0.7 0.271863
Target:  5'- cAGCCCGCGCug---CC-CGCGGCCg- -3'
miRNA:   3'- -UCGGGCGUGuacuaGGcGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 34351 0.67 0.416366
Target:  5'- uGCCguCGUuguagagguugACGuUGAUCUGCGCGGUCUGa -3'
miRNA:   3'- uCGG--GCG-----------UGU-ACUAGGCGUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 35469 0.66 0.46111
Target:  5'- cAGUCCGCGagGUGA-CCGCgugagugacagcaaGCGGCCg- -3'
miRNA:   3'- -UCGGGCGUg-UACUaGGCG--------------UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 38073 0.68 0.354902
Target:  5'- gAGCgCCGCGuCAcuGUgCGCgGCGGCCUGa -3'
miRNA:   3'- -UCG-GGCGU-GUacUAgGCG-UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 38626 0.66 0.444626
Target:  5'- cGGCCCGCA---GG-CCGCGCuGGCgCUGc -3'
miRNA:   3'- -UCGGGCGUguaCUaGGCGUG-CCG-GAC- -5'
12854 3' -59.7 NC_003387.1 + 40439 0.67 0.371797
Target:  5'- cGGCCCGCugAUccggCCGC-CGGUCg- -3'
miRNA:   3'- -UCGGGCGugUAcua-GGCGuGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 42477 0.69 0.285715
Target:  5'- gAGCCCGCGC----UCgGCGCGGCUc- -3'
miRNA:   3'- -UCGGGCGUGuacuAGgCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 43190 0.66 0.435086
Target:  5'- cGGCuuGCGCAggcaCCGCuugACGGCCa- -3'
miRNA:   3'- -UCGggCGUGUacuaGGCG---UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 43672 0.74 0.130057
Target:  5'- aGGCCCGCcuucuGCGcGAUCUGCGCGaCCUGg -3'
miRNA:   3'- -UCGGGCG-----UGUaCUAGGCGUGCcGGAC- -5'
12854 3' -59.7 NC_003387.1 + 44797 0.69 0.315076
Target:  5'- uGGCCCGCGC--GAUCCuCgACGGgCUGa -3'
miRNA:   3'- -UCGGGCGUGuaCUAGGcG-UGCCgGAC- -5'
12854 3' -59.7 NC_003387.1 + 45745 0.7 0.24516
Target:  5'- cGCCUGCACAagUGGUCCgaggGCGCGcuguggcGCCUGc -3'
miRNA:   3'- uCGGGCGUGU--ACUAGG----CGUGC-------CGGAC- -5'
12854 3' -59.7 NC_003387.1 + 45956 0.69 0.27872
Target:  5'- cGGCCCGCGCAagggcgaggcgUGcgCUGUG-GGCCUGu -3'
miRNA:   3'- -UCGGGCGUGU-----------ACuaGGCGUgCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 46883 0.66 0.464053
Target:  5'- cGCCCccaccugcgGCGCAgcccgGGUCgucgUGCACGGCCg- -3'
miRNA:   3'- uCGGG---------CGUGUa----CUAG----GCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 47731 0.69 0.307528
Target:  5'- aGGCCCGCAgaauCGcgaccgaccugcUGcgCgaGCACGGCCUGa -3'
miRNA:   3'- -UCGGGCGU----GU------------ACuaGg-CGUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 48162 0.66 0.435086
Target:  5'- aGGCCCGCGCGg---UCGCGCaGGCg-- -3'
miRNA:   3'- -UCGGGCGUGUacuaGGCGUG-CCGgac -5'
12854 3' -59.7 NC_003387.1 + 48186 0.67 0.416366
Target:  5'- aGGCCCGCAagGUGc-CCGCaccggcggcgGCGGCCg- -3'
miRNA:   3'- -UCGGGCGUg-UACuaGGCG----------UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 49210 0.75 0.123111
Target:  5'- gAGCCCGCAacgGAUCUGCcggucgagGCGGCCg- -3'
miRNA:   3'- -UCGGGCGUguaCUAGGCG--------UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 51216 0.73 0.149034
Target:  5'- gAGCCUGCAC---GUCgGcCGCGGCCUGg -3'
miRNA:   3'- -UCGGGCGUGuacUAGgC-GUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 51574 0.66 0.454283
Target:  5'- aAGCaCCGCGCAUGca-CGCAgGcGCCg- -3'
miRNA:   3'- -UCG-GGCGUGUACuagGCGUgC-CGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.