Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 52255 | 0.68 | 0.338556 |
Target: 5'- cAGCUCGCGCcgGucgCCGU-CGGCCg- -3' miRNA: 3'- -UCGGGCGUGuaCua-GGCGuGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 51574 | 0.66 | 0.454283 |
Target: 5'- aAGCaCCGCGCAUGca-CGCAgGcGCCg- -3' miRNA: 3'- -UCG-GGCGUGUACuagGCGUgC-CGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 51216 | 0.73 | 0.149034 |
Target: 5'- gAGCCUGCAC---GUCgGcCGCGGCCUGg -3' miRNA: 3'- -UCGGGCGUGuacUAGgC-GUGCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 49210 | 0.75 | 0.123111 |
Target: 5'- gAGCCCGCAacgGAUCUGCcggucgagGCGGCCg- -3' miRNA: 3'- -UCGGGCGUguaCUAGGCG--------UGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 48186 | 0.67 | 0.416366 |
Target: 5'- aGGCCCGCAagGUGc-CCGCaccggcggcgGCGGCCg- -3' miRNA: 3'- -UCGGGCGUg-UACuaGGCG----------UGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 48162 | 0.66 | 0.435086 |
Target: 5'- aGGCCCGCGCGg---UCGCGCaGGCg-- -3' miRNA: 3'- -UCGGGCGUGUacuaGGCGUG-CCGgac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 47731 | 0.69 | 0.307528 |
Target: 5'- aGGCCCGCAgaauCGcgaccgaccugcUGcgCgaGCACGGCCUGa -3' miRNA: 3'- -UCGGGCGU----GU------------ACuaGg-CGUGCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 46883 | 0.66 | 0.464053 |
Target: 5'- cGCCCccaccugcgGCGCAgcccgGGUCgucgUGCACGGCCg- -3' miRNA: 3'- uCGGG---------CGUGUa----CUAG----GCGUGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 45956 | 0.69 | 0.27872 |
Target: 5'- cGGCCCGCGCAagggcgaggcgUGcgCUGUG-GGCCUGu -3' miRNA: 3'- -UCGGGCGUGU-----------ACuaGGCGUgCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 45745 | 0.7 | 0.24516 |
Target: 5'- cGCCUGCACAagUGGUCCgaggGCGCGcuguggcGCCUGc -3' miRNA: 3'- uCGGGCGUGU--ACUAGG----CGUGC-------CGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 44797 | 0.69 | 0.315076 |
Target: 5'- uGGCCCGCGC--GAUCCuCgACGGgCUGa -3' miRNA: 3'- -UCGGGCGUGuaCUAGGcG-UGCCgGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 43672 | 0.74 | 0.130057 |
Target: 5'- aGGCCCGCcuucuGCGcGAUCUGCGCGaCCUGg -3' miRNA: 3'- -UCGGGCG-----UGUaCUAGGCGUGCcGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 43190 | 0.66 | 0.435086 |
Target: 5'- cGGCuuGCGCAggcaCCGCuugACGGCCa- -3' miRNA: 3'- -UCGggCGUGUacuaGGCG---UGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 42477 | 0.69 | 0.285715 |
Target: 5'- gAGCCCGCGC----UCgGCGCGGCUc- -3' miRNA: 3'- -UCGGGCGUGuacuAGgCGUGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 40439 | 0.67 | 0.371797 |
Target: 5'- cGGCCCGCugAUccggCCGC-CGGUCg- -3' miRNA: 3'- -UCGGGCGugUAcua-GGCGuGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 38626 | 0.66 | 0.444626 |
Target: 5'- cGGCCCGCA---GG-CCGCGCuGGCgCUGc -3' miRNA: 3'- -UCGGGCGUguaCUaGGCGUG-CCG-GAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 38073 | 0.68 | 0.354902 |
Target: 5'- gAGCgCCGCGuCAcuGUgCGCgGCGGCCUGa -3' miRNA: 3'- -UCG-GGCGU-GUacUAgGCG-UGCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 35469 | 0.66 | 0.46111 |
Target: 5'- cAGUCCGCGagGUGA-CCGCgugagugacagcaaGCGGCCg- -3' miRNA: 3'- -UCGGGCGUg-UACUaGGCG--------------UGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 34351 | 0.67 | 0.416366 |
Target: 5'- uGCCguCGUuguagagguugACGuUGAUCUGCGCGGUCUGa -3' miRNA: 3'- uCGG--GCG-----------UGU-ACUAGGCGUGCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 34314 | 0.7 | 0.271863 |
Target: 5'- cAGCCCGCGCug---CC-CGCGGCCg- -3' miRNA: 3'- -UCGGGCGUGuacuaGGcGUGCCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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