Results 41 - 60 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 17159 | 0.7 | 0.265142 |
Target: 5'- cGGCCCGCGC-UGAgcuggUGCGCcGCCUGg -3' miRNA: 3'- -UCGGGCGUGuACUag---GCGUGcCGGAC- -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 15991 | 0.73 | 0.149034 |
Target: 5'- cGGgCCGCACuggcUGGUCCgGUACGGCCg- -3' miRNA: 3'- -UCgGGCGUGu---ACUAGG-CGUGCCGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 15272 | 0.68 | 0.33059 |
Target: 5'- cAGCgCCGCcaGCAUGGcaaCCGUcgGCGGCUUGg -3' miRNA: 3'- -UCG-GGCG--UGUACUa--GGCG--UGCCGGAC- -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 13029 | 0.66 | 0.435086 |
Target: 5'- cGCCCGCACGUcg-CUGCGCaacGCCg- -3' miRNA: 3'- uCGGGCGUGUAcuaGGCGUGc--CGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 12930 | 0.68 | 0.363281 |
Target: 5'- aAGCCUGCGCAaucaggCCGC-UGGCCUc -3' miRNA: 3'- -UCGGGCGUGUacua--GGCGuGCCGGAc -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 12455 | 0.71 | 0.221815 |
Target: 5'- gGGgUCGCGCAgaucGGUCUGCACGGUCa- -3' miRNA: 3'- -UCgGGCGUGUa---CUAGGCGUGCCGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 12441 | 0.67 | 0.416366 |
Target: 5'- gGGCgCUGC-CGaGGUUCGCuggcgGCGGCCUGg -3' miRNA: 3'- -UCG-GGCGuGUaCUAGGCG-----UGCCGGAC- -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 10728 | 0.67 | 0.398147 |
Target: 5'- cGGCCC-CACcgcuUGAgcaCCGCGgCGGCCUc -3' miRNA: 3'- -UCGGGcGUGu---ACUa--GGCGU-GCCGGAc -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 10355 | 1.07 | 0.000452 |
Target: 5'- cAGCCCGCACAUGAUCCGCACGGCCUGc -3' miRNA: 3'- -UCGGGCGUGUACUAGGCGUGCCGGAC- -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 8026 | 0.83 | 0.030644 |
Target: 5'- cGGCCCGCugGUGG-CCGCGCGaGCCUa -3' miRNA: 3'- -UCGGGCGugUACUaGGCGUGC-CGGAc -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 6877 | 0.69 | 0.27872 |
Target: 5'- cAGCUCGCGCAgGAUCUcCGCGGCg-- -3' miRNA: 3'- -UCGGGCGUGUaCUAGGcGUGCCGgac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 6426 | 0.67 | 0.398147 |
Target: 5'- cGGCCCGC---UGcgCCGCcugcuCGGCCUc -3' miRNA: 3'- -UCGGGCGuguACuaGGCGu----GCCGGAc -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 4698 | 0.68 | 0.33059 |
Target: 5'- uGCCCGCACGUG--CCGaucCACGGCg-- -3' miRNA: 3'- uCGGGCGUGUACuaGGC---GUGCCGgac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 4555 | 0.7 | 0.258555 |
Target: 5'- gGGCCUGCGCcUGcgcgaCCGCGCgGGCCUc -3' miRNA: 3'- -UCGGGCGUGuACua---GGCGUG-CCGGAc -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 4173 | 0.68 | 0.34666 |
Target: 5'- cGCCUgGCACGUGAccUCgGCGCGGUg-- -3' miRNA: 3'- uCGGG-CGUGUACU--AGgCGUGCCGgac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 2370 | 0.69 | 0.307527 |
Target: 5'- cGCCaCGUACGcGGUCaCGUugccgcggGCGGCCUGa -3' miRNA: 3'- uCGG-GCGUGUaCUAG-GCG--------UGCCGGAC- -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 1939 | 0.68 | 0.338556 |
Target: 5'- uGCa-GCGCAUGAUCCGgcCGCgGGUCUGg -3' miRNA: 3'- uCGggCGUGUACUAGGC--GUG-CCGGAC- -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 1792 | 0.68 | 0.354902 |
Target: 5'- aAGCCCGCAagguCAaggugaagcUGAcCgGCGCGGCCg- -3' miRNA: 3'- -UCGGGCGU----GU---------ACUaGgCGUGCCGGac -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 1586 | 0.7 | 0.239598 |
Target: 5'- cGCCCugGCggucgACAUG--UCGCACGGCCUGg -3' miRNA: 3'- uCGGG--CG-----UGUACuaGGCGUGCCGGAC- -5' |
|||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 958 | 0.71 | 0.227615 |
Target: 5'- ---gCGCACcgGAcCCGCACGGCCg- -3' miRNA: 3'- ucggGCGUGuaCUaGGCGUGCCGGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home