miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12854 3' -59.7 NC_003387.1 + 8026 0.83 0.030644
Target:  5'- cGGCCCGCugGUGG-CCGCGCGaGCCUa -3'
miRNA:   3'- -UCGGGCGugUACUaGGCGUGC-CGGAc -5'
12854 3' -59.7 NC_003387.1 + 138 0.68 0.34666
Target:  5'- cGCCCuCGC--GAUCCGCGCcgccgagcugGGCCUGc -3'
miRNA:   3'- uCGGGcGUGuaCUAGGCGUG----------CCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 38073 0.68 0.354902
Target:  5'- gAGCgCCGCGuCAcuGUgCGCgGCGGCCUGa -3'
miRNA:   3'- -UCG-GGCGU-GUacUAgGCG-UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 46883 0.66 0.464053
Target:  5'- cGCCCccaccugcgGCGCAgcccgGGUCgucgUGCACGGCCg- -3'
miRNA:   3'- uCGGG---------CGUGUa----CUAG----GCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 34035 0.71 0.221243
Target:  5'- cGaCCCGCACcUGGUCgGCgugugggGCGGCCUa -3'
miRNA:   3'- uC-GGGCGUGuACUAGgCG-------UGCCGGAc -5'
12854 3' -59.7 NC_003387.1 + 958 0.71 0.227615
Target:  5'- ---gCGCACcgGAcCCGCACGGCCg- -3'
miRNA:   3'- ucggGCGUGuaCUaGGCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 1586 0.7 0.239598
Target:  5'- cGCCCugGCggucgACAUG--UCGCACGGCCUGg -3'
miRNA:   3'- uCGGG--CG-----UGUACuaGGCGUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 45745 0.7 0.24516
Target:  5'- cGCCUGCACAagUGGUCCgaggGCGCGcuguggcGCCUGc -3'
miRNA:   3'- uCGGGCGUGU--ACUAGG----CGUGC-------CGGAC- -5'
12854 3' -59.7 NC_003387.1 + 45956 0.69 0.27872
Target:  5'- cGGCCCGCGCAagggcgaggcgUGcgCUGUG-GGCCUGu -3'
miRNA:   3'- -UCGGGCGUGU-----------ACuaGGCGUgCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 31607 0.68 0.338556
Target:  5'- uGGCCCGCcucgguauuCGUGA-CCGCACcGcCCUGg -3'
miRNA:   3'- -UCGGGCGu--------GUACUaGGCGUGcC-GGAC- -5'
12854 3' -59.7 NC_003387.1 + 47731 0.69 0.307528
Target:  5'- aGGCCCGCAgaauCGcgaccgaccugcUGcgCgaGCACGGCCUGa -3'
miRNA:   3'- -UCGGGCGU----GU------------ACuaGg-CGUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 34314 0.7 0.271863
Target:  5'- cAGCCCGCGCug---CC-CGCGGCCg- -3'
miRNA:   3'- -UCGGGCGUGuacuaGGcGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 49210 0.75 0.123111
Target:  5'- gAGCCCGCAacgGAUCUGCcggucgagGCGGCCg- -3'
miRNA:   3'- -UCGGGCGUguaCUAGGCG--------UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 44797 0.69 0.315076
Target:  5'- uGGCCCGCGC--GAUCCuCgACGGgCUGa -3'
miRNA:   3'- -UCGGGCGUGuaCUAGGcG-UGCCgGAC- -5'
12854 3' -59.7 NC_003387.1 + 15991 0.73 0.149034
Target:  5'- cGGgCCGCACuggcUGGUCCgGUACGGCCg- -3'
miRNA:   3'- -UCgGGCGUGu---ACUAGG-CGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 17159 0.7 0.265142
Target:  5'- cGGCCCGCGC-UGAgcuggUGCGCcGCCUGg -3'
miRNA:   3'- -UCGGGCGUGuACUag---GCGUGcCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 26126 0.68 0.33059
Target:  5'- aGGUCgGCGCGUccgucgCCGCucgcGCGGCCUGa -3'
miRNA:   3'- -UCGGgCGUGUAcua---GGCG----UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 1792 0.68 0.354902
Target:  5'- aAGCCCGCAagguCAaggugaagcUGAcCgGCGCGGCCg- -3'
miRNA:   3'- -UCGGGCGU----GU---------ACUaGgCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 51216 0.73 0.149034
Target:  5'- gAGCCUGCAC---GUCgGcCGCGGCCUGg -3'
miRNA:   3'- -UCGGGCGUGuacUAGgC-GUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 25867 0.71 0.227615
Target:  5'- uGGCCUGCAguUG--CCGaGCGGCCUGg -3'
miRNA:   3'- -UCGGGCGUguACuaGGCgUGCCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.