miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12854 3' -59.7 NC_003387.1 + 12441 0.67 0.416366
Target:  5'- gGGCgCUGC-CGaGGUUCGCuggcgGCGGCCUGg -3'
miRNA:   3'- -UCG-GGCGuGUaCUAGGCG-----UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 138 0.68 0.34666
Target:  5'- cGCCCuCGC--GAUCCGCGCcgccgagcugGGCCUGc -3'
miRNA:   3'- uCGGGcGUGuaCUAGGCGUG----------CCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 44797 0.69 0.315076
Target:  5'- uGGCCCGCGC--GAUCCuCgACGGgCUGa -3'
miRNA:   3'- -UCGGGCGUGuaCUAGGcG-UGCCgGAC- -5'
12854 3' -59.7 NC_003387.1 + 35469 0.66 0.46111
Target:  5'- cAGUCCGCGagGUGA-CCGCgugagugacagcaaGCGGCCg- -3'
miRNA:   3'- -UCGGGCGUg-UACUaGGCG--------------UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 29405 0.67 0.380447
Target:  5'- cGCCCGCcgggcGCAggagGAggccgCCGCAgCGGCCc- -3'
miRNA:   3'- uCGGGCG-----UGUa---CUa----GGCGU-GCCGGac -5'
12854 3' -59.7 NC_003387.1 + 47731 0.69 0.307528
Target:  5'- aGGCCCGCAgaauCGcgaccgaccugcUGcgCgaGCACGGCCUGa -3'
miRNA:   3'- -UCGGGCGU----GU------------ACuaGg-CGUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 51574 0.66 0.454283
Target:  5'- aAGCaCCGCGCAUGca-CGCAgGcGCCg- -3'
miRNA:   3'- -UCG-GGCGUGUACuagGCGUgC-CGGac -5'
12854 3' -59.7 NC_003387.1 + 32323 0.69 0.292848
Target:  5'- uGCCCG-ACAUGGaCCGCuGCGGCUg- -3'
miRNA:   3'- uCGGGCgUGUACUaGGCG-UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 45956 0.69 0.27872
Target:  5'- cGGCCCGCGCAagggcgaggcgUGcgCUGUG-GGCCUGu -3'
miRNA:   3'- -UCGGGCGUGU-----------ACuaGGCGUgCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 19177 0.66 0.464053
Target:  5'- cGGCCCGCACGg---UCGCuaACGGCa-- -3'
miRNA:   3'- -UCGGGCGUGUacuaGGCG--UGCCGgac -5'
12854 3' -59.7 NC_003387.1 + 26126 0.68 0.33059
Target:  5'- aGGUCgGCGCGUccgucgCCGCucgcGCGGCCUGa -3'
miRNA:   3'- -UCGGgCGUGUAcua---GGCG----UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 17570 0.68 0.33059
Target:  5'- cAGCCCGCccuCGcUGGUgUCGUGCGGCCa- -3'
miRNA:   3'- -UCGGGCGu--GU-ACUA-GGCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 1939 0.68 0.338556
Target:  5'- uGCa-GCGCAUGAUCCGgcCGCgGGUCUGg -3'
miRNA:   3'- uCGggCGUGUACUAGGC--GUG-CCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 52255 0.68 0.338556
Target:  5'- cAGCUCGCGCcgGucgCCGU-CGGCCg- -3'
miRNA:   3'- -UCGGGCGUGuaCua-GGCGuGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 31513 0.75 0.113334
Target:  5'- cGCCCGCACGcUGuUCCaCGCGGCCa- -3'
miRNA:   3'- uCGGGCGUGU-ACuAGGcGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 6426 0.67 0.398147
Target:  5'- cGGCCCGC---UGcgCCGCcugcuCGGCCUc -3'
miRNA:   3'- -UCGGGCGuguACuaGGCGu----GCCGGAc -5'
12854 3' -59.7 NC_003387.1 + 4555 0.7 0.258555
Target:  5'- gGGCCUGCGCcUGcgcgaCCGCGCgGGCCUc -3'
miRNA:   3'- -UCGGGCGUGuACua---GGCGUG-CCGGAc -5'
12854 3' -59.7 NC_003387.1 + 21780 0.71 0.227615
Target:  5'- cAGCCagcgGCGCAcGAUCUGCgACGGCCc- -3'
miRNA:   3'- -UCGGg---CGUGUaCUAGGCG-UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 12455 0.71 0.221815
Target:  5'- gGGgUCGCGCAgaucGGUCUGCACGGUCa- -3'
miRNA:   3'- -UCgGGCGUGUa---CUAGGCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 43672 0.74 0.130057
Target:  5'- aGGCCCGCcuucuGCGcGAUCUGCGCGaCCUGg -3'
miRNA:   3'- -UCGGGCG-----UGUaCUAGGCGUGCcGGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.