miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12854 3' -59.7 NC_003387.1 + 34351 0.67 0.416366
Target:  5'- uGCCguCGUuguagagguugACGuUGAUCUGCGCGGUCUGa -3'
miRNA:   3'- uCGG--GCG-----------UGU-ACUAGGCGUGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 24396 0.66 0.425664
Target:  5'- cGCCCgGCAgGcUGAUCUGCACGcCCg- -3'
miRNA:   3'- uCGGG-CGUgU-ACUAGGCGUGCcGGac -5'
12854 3' -59.7 NC_003387.1 + 27144 0.66 0.435086
Target:  5'- uGCCCGC-CggGGUCgGCGCcGCCg- -3'
miRNA:   3'- uCGGGCGuGuaCUAGgCGUGcCGGac -5'
12854 3' -59.7 NC_003387.1 + 43190 0.66 0.435086
Target:  5'- cGGCuuGCGCAggcaCCGCuugACGGCCa- -3'
miRNA:   3'- -UCGggCGUGUacuaGGCG---UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 1939 0.68 0.338556
Target:  5'- uGCa-GCGCAUGAUCCGgcCGCgGGUCUGg -3'
miRNA:   3'- uCGggCGUGUACUAGGC--GUG-CCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 17570 0.68 0.33059
Target:  5'- cAGCCCGCccuCGcUGGUgUCGUGCGGCCa- -3'
miRNA:   3'- -UCGGGCGu--GU-ACUA-GGCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 4698 0.68 0.33059
Target:  5'- uGCCCGCACGUG--CCGaucCACGGCg-- -3'
miRNA:   3'- uCGGGCGUGUACuaGGC---GUGCCGgac -5'
12854 3' -59.7 NC_003387.1 + 31513 0.75 0.113334
Target:  5'- cGCCCGCACGcUGuUCCaCGCGGCCa- -3'
miRNA:   3'- uCGGGCGUGU-ACuAGGcGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 43672 0.74 0.130057
Target:  5'- aGGCCCGCcuucuGCGcGAUCUGCGCGaCCUGg -3'
miRNA:   3'- -UCGGGCG-----UGUaCUAGGCGUGCcGGAC- -5'
12854 3' -59.7 NC_003387.1 + 12455 0.71 0.221815
Target:  5'- gGGgUCGCGCAgaucGGUCUGCACGGUCa- -3'
miRNA:   3'- -UCgGGCGUGUa---CUAGGCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 21780 0.71 0.227615
Target:  5'- cAGCCagcgGCGCAcGAUCUGCgACGGCCc- -3'
miRNA:   3'- -UCGGg---CGUGUaCUAGGCG-UGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 4555 0.7 0.258555
Target:  5'- gGGCCUGCGCcUGcgcgaCCGCGCgGGCCUc -3'
miRNA:   3'- -UCGGGCGUGuACua---GGCGUG-CCGGAc -5'
12854 3' -59.7 NC_003387.1 + 6877 0.69 0.27872
Target:  5'- cAGCUCGCGCAgGAUCUcCGCGGCg-- -3'
miRNA:   3'- -UCGGGCGUGUaCUAGGcGUGCCGgac -5'
12854 3' -59.7 NC_003387.1 + 17780 0.7 0.265141
Target:  5'- gAGCuuGCGCAg---CgGCACGGCCg- -3'
miRNA:   3'- -UCGggCGUGUacuaGgCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 31141 0.69 0.27872
Target:  5'- cGGCCuCGCugAUG--CCGCGCG-CCUGg -3'
miRNA:   3'- -UCGG-GCGugUACuaGGCGUGCcGGAC- -5'
12854 3' -59.7 NC_003387.1 + 33267 0.69 0.27872
Target:  5'- cGCCCaCAC-UGAcacgcgcCCGCACGGCCUu -3'
miRNA:   3'- uCGGGcGUGuACUa------GGCGUGCCGGAc -5'
12854 3' -59.7 NC_003387.1 + 42477 0.69 0.285715
Target:  5'- gAGCCCGCGC----UCgGCGCGGCUc- -3'
miRNA:   3'- -UCGGGCGUGuacuAGgCGUGCCGGac -5'
12854 3' -59.7 NC_003387.1 + 22993 0.69 0.300118
Target:  5'- cGCCCGCGUAgcugCCGUcguCGGCCUGg -3'
miRNA:   3'- uCGGGCGUGUacuaGGCGu--GCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 2370 0.69 0.307527
Target:  5'- cGCCaCGUACGcGGUCaCGUugccgcggGCGGCCUGa -3'
miRNA:   3'- uCGG-GCGUGUaCUAG-GCG--------UGCCGGAC- -5'
12854 3' -59.7 NC_003387.1 + 15272 0.68 0.33059
Target:  5'- cAGCgCCGCcaGCAUGGcaaCCGUcgGCGGCUUGg -3'
miRNA:   3'- -UCG-GGCG--UGUACUa--GGCG--UGCCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.