Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 33267 | 0.69 | 0.27872 |
Target: 5'- cGCCCaCAC-UGAcacgcgcCCGCACGGCCUu -3' miRNA: 3'- uCGGGcGUGuACUa------GGCGUGCCGGAc -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 52255 | 0.68 | 0.338556 |
Target: 5'- cAGCUCGCGCcgGucgCCGU-CGGCCg- -3' miRNA: 3'- -UCGGGCGUGuaCua-GGCGuGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 1939 | 0.68 | 0.338556 |
Target: 5'- uGCa-GCGCAUGAUCCGgcCGCgGGUCUGg -3' miRNA: 3'- uCGggCGUGUACUAGGC--GUG-CCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 17570 | 0.68 | 0.33059 |
Target: 5'- cAGCCCGCccuCGcUGGUgUCGUGCGGCCa- -3' miRNA: 3'- -UCGGGCGu--GU-ACUA-GGCGUGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 4698 | 0.68 | 0.33059 |
Target: 5'- uGCCCGCACGUG--CCGaucCACGGCg-- -3' miRNA: 3'- uCGGGCGUGUACuaGGC---GUGCCGgac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 15272 | 0.68 | 0.33059 |
Target: 5'- cAGCgCCGCcaGCAUGGcaaCCGUcgGCGGCUUGg -3' miRNA: 3'- -UCG-GGCG--UGUACUa--GGCG--UGCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 2370 | 0.69 | 0.307527 |
Target: 5'- cGCCaCGUACGcGGUCaCGUugccgcggGCGGCCUGa -3' miRNA: 3'- uCGG-GCGUGUaCUAG-GCG--------UGCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 22993 | 0.69 | 0.300118 |
Target: 5'- cGCCCGCGUAgcugCCGUcguCGGCCUGg -3' miRNA: 3'- uCGGGCGUGUacuaGGCGu--GCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 42477 | 0.69 | 0.285715 |
Target: 5'- gAGCCCGCGC----UCgGCGCGGCUc- -3' miRNA: 3'- -UCGGGCGUGuacuAGgCGUGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 4173 | 0.68 | 0.34666 |
Target: 5'- cGCCUgGCACGUGAccUCgGCGCGGUg-- -3' miRNA: 3'- uCGGG-CGUGUACU--AGgCGUGCCGgac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 26806 | 0.68 | 0.354902 |
Target: 5'- aGGCCgCGCugGUGGUCgGUgaGCGcGCCg- -3' miRNA: 3'- -UCGG-GCGugUACUAGgCG--UGC-CGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 12930 | 0.68 | 0.363281 |
Target: 5'- aAGCCUGCGCAaucaggCCGC-UGGCCUc -3' miRNA: 3'- -UCGGGCGUGUacua--GGCGuGCCGGAc -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 43190 | 0.66 | 0.435086 |
Target: 5'- cGGCuuGCGCAggcaCCGCuugACGGCCa- -3' miRNA: 3'- -UCGggCGUGUacuaGGCG---UGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 27144 | 0.66 | 0.435086 |
Target: 5'- uGCCCGC-CggGGUCgGCGCcGCCg- -3' miRNA: 3'- uCGGGCGuGuaCUAGgCGUGcCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 24396 | 0.66 | 0.425664 |
Target: 5'- cGCCCgGCAgGcUGAUCUGCACGcCCg- -3' miRNA: 3'- uCGGG-CGUgU-ACUAGGCGUGCcGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 34351 | 0.67 | 0.416366 |
Target: 5'- uGCCguCGUuguagagguugACGuUGAUCUGCGCGGUCUGa -3' miRNA: 3'- uCGG--GCG-----------UGU-ACUAGGCGUGCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 10728 | 0.67 | 0.398147 |
Target: 5'- cGGCCC-CACcgcuUGAgcaCCGCGgCGGCCUc -3' miRNA: 3'- -UCGGGcGUGu---ACUa--GGCGU-GCCGGAc -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 6426 | 0.67 | 0.398147 |
Target: 5'- cGGCCCGC---UGcgCCGCcugcuCGGCCUc -3' miRNA: 3'- -UCGGGCGuguACuaGGCGu----GCCGGAc -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 27247 | 0.67 | 0.380447 |
Target: 5'- cGCCCGacaGgAUGcgCCGCAUGaGCCg- -3' miRNA: 3'- uCGGGCg--UgUACuaGGCGUGC-CGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 40439 | 0.67 | 0.371797 |
Target: 5'- cGGCCCGCugAUccggCCGC-CGGUCg- -3' miRNA: 3'- -UCGGGCGugUAcua-GGCGuGCCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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