Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12854 | 3' | -59.7 | NC_003387.1 | + | 51574 | 0.66 | 0.454283 |
Target: 5'- aAGCaCCGCGCAUGca-CGCAgGcGCCg- -3' miRNA: 3'- -UCG-GGCGUGUACuagGCGUgC-CGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 35469 | 0.66 | 0.46111 |
Target: 5'- cAGUCCGCGagGUGA-CCGCgugagugacagcaaGCGGCCg- -3' miRNA: 3'- -UCGGGCGUg-UACUaGGCG--------------UGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 19177 | 0.66 | 0.464053 |
Target: 5'- cGGCCCGCACGg---UCGCuaACGGCa-- -3' miRNA: 3'- -UCGGGCGUGUacuaGGCG--UGCCGgac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 46883 | 0.66 | 0.464053 |
Target: 5'- cGCCCccaccugcgGCGCAgcccgGGUCgucgUGCACGGCCg- -3' miRNA: 3'- uCGGG---------CGUGUa----CUAG----GCGUGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 31607 | 0.68 | 0.338556 |
Target: 5'- uGGCCCGCcucgguauuCGUGA-CCGCACcGcCCUGg -3' miRNA: 3'- -UCGGGCGu--------GUACUaGGCGUGcC-GGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 26126 | 0.68 | 0.33059 |
Target: 5'- aGGUCgGCGCGUccgucgCCGCucgcGCGGCCUGa -3' miRNA: 3'- -UCGGgCGUGUAcua---GGCG----UGCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 44797 | 0.69 | 0.315076 |
Target: 5'- uGGCCCGCGC--GAUCCuCgACGGgCUGa -3' miRNA: 3'- -UCGGGCGUGuaCUAGGcG-UGCCgGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 49210 | 0.75 | 0.123111 |
Target: 5'- gAGCCCGCAacgGAUCUGCcggucgagGCGGCCg- -3' miRNA: 3'- -UCGGGCGUguaCUAGGCG--------UGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 15991 | 0.73 | 0.149034 |
Target: 5'- cGGgCCGCACuggcUGGUCCgGUACGGCCg- -3' miRNA: 3'- -UCgGGCGUGu---ACUAGG-CGUGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 51216 | 0.73 | 0.149034 |
Target: 5'- gAGCCUGCAC---GUCgGcCGCGGCCUGg -3' miRNA: 3'- -UCGGGCGUGuacUAGgC-GUGCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 34035 | 0.71 | 0.221243 |
Target: 5'- cGaCCCGCACcUGGUCgGCgugugggGCGGCCUa -3' miRNA: 3'- uC-GGGCGUGuACUAGgCG-------UGCCGGAc -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 958 | 0.71 | 0.227615 |
Target: 5'- ---gCGCACcgGAcCCGCACGGCCg- -3' miRNA: 3'- ucggGCGUGuaCUaGGCGUGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 25867 | 0.71 | 0.227615 |
Target: 5'- uGGCCUGCAguUG--CCGaGCGGCCUGg -3' miRNA: 3'- -UCGGGCGUguACuaGGCgUGCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 1586 | 0.7 | 0.239598 |
Target: 5'- cGCCCugGCggucgACAUG--UCGCACGGCCUGg -3' miRNA: 3'- uCGGG--CG-----UGUACuaGGCGUGCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 45745 | 0.7 | 0.24516 |
Target: 5'- cGCCUGCACAagUGGUCCgaggGCGCGcuguggcGCCUGc -3' miRNA: 3'- uCGGGCGUGU--ACUAGG----CGUGC-------CGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 17159 | 0.7 | 0.265142 |
Target: 5'- cGGCCCGCGC-UGAgcuggUGCGCcGCCUGg -3' miRNA: 3'- -UCGGGCGUGuACUag---GCGUGcCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 34314 | 0.7 | 0.271863 |
Target: 5'- cAGCCCGCGCug---CC-CGCGGCCg- -3' miRNA: 3'- -UCGGGCGUGuacuaGGcGUGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 45956 | 0.69 | 0.27872 |
Target: 5'- cGGCCCGCGCAagggcgaggcgUGcgCUGUG-GGCCUGu -3' miRNA: 3'- -UCGGGCGUGU-----------ACuaGGCGUgCCGGAC- -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 32323 | 0.69 | 0.292848 |
Target: 5'- uGCCCG-ACAUGGaCCGCuGCGGCUg- -3' miRNA: 3'- uCGGGCgUGUACUaGGCG-UGCCGGac -5' |
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12854 | 3' | -59.7 | NC_003387.1 | + | 47731 | 0.69 | 0.307528 |
Target: 5'- aGGCCCGCAgaauCGcgaccgaccugcUGcgCgaGCACGGCCUGa -3' miRNA: 3'- -UCGGGCGU----GU------------ACuaGg-CGUGCCGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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