miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12854 5' -54.5 NC_003387.1 + 5331 0.66 0.754964
Target:  5'- gGCCGGUUGccCCGCgcuugCGGUG-UCgGUg -3'
miRNA:   3'- -CGGUCAACacGGCGa----GCCACuAGaCG- -5'
12854 5' -54.5 NC_003387.1 + 7946 0.66 0.733918
Target:  5'- gGCCAGcUUGUcgaggucggGCCGCUucacggCGGgcgGGUgCUGCg -3'
miRNA:   3'- -CGGUC-AACA---------CGGCGA------GCCa--CUA-GACG- -5'
12854 5' -54.5 NC_003387.1 + 1660 0.66 0.733918
Target:  5'- gGCaCAGUUGUGCUGCugcaaUCGG-GAgucuaaaUUGCg -3'
miRNA:   3'- -CG-GUCAACACGGCG-----AGCCaCUa------GACG- -5'
12854 5' -54.5 NC_003387.1 + 14887 0.66 0.732854
Target:  5'- gGCgCAGggGUGCCcgaccucGCUCGGcccGAUC-GCg -3'
miRNA:   3'- -CG-GUCaaCACGG-------CGAGCCa--CUAGaCG- -5'
12854 5' -54.5 NC_003387.1 + 14233 0.67 0.668658
Target:  5'- cGCCcacg--GCCGCUCGG-GAUCggGCc -3'
miRNA:   3'- -CGGucaacaCGGCGAGCCaCUAGa-CG- -5'
12854 5' -54.5 NC_003387.1 + 32605 0.67 0.657593
Target:  5'- uGUCGGUguugGUGCCG-UCGGUGuacCUGg -3'
miRNA:   3'- -CGGUCAa---CACGGCgAGCCACua-GACg -5'
12854 5' -54.5 NC_003387.1 + 6132 0.68 0.603224
Target:  5'- uGCCGGUgcUGgcgacccugcccgagGCCGauugggUCGGUGAgUCUGCg -3'
miRNA:   3'- -CGGUCA--ACa--------------CGGCg-----AGCCACU-AGACG- -5'
12854 5' -54.5 NC_003387.1 + 26843 0.68 0.597691
Target:  5'- cGCCGGggagcaccagGCCGCUCGGcaa-CUGCa -3'
miRNA:   3'- -CGGUCaaca------CGGCGAGCCacuaGACG- -5'
12854 5' -54.5 NC_003387.1 + 33521 0.69 0.558141
Target:  5'- cGCCAGcaagGUGCCGCacauUCGGcg--CUGCc -3'
miRNA:   3'- -CGGUCaa--CACGGCG----AGCCacuaGACG- -5'
12854 5' -54.5 NC_003387.1 + 34649 0.7 0.504571
Target:  5'- cGUCAGgaucggGUGCCGCUgggcaacgcCGGUGAaguUCUGa -3'
miRNA:   3'- -CGGUCaa----CACGGCGA---------GCCACU---AGACg -5'
12854 5' -54.5 NC_003387.1 + 48825 0.71 0.443435
Target:  5'- cGCCGGUcGUGCUGCUCGGcgcGA-CgcacgGCg -3'
miRNA:   3'- -CGGUCAaCACGGCGAGCCa--CUaGa----CG- -5'
12854 5' -54.5 NC_003387.1 + 15552 0.71 0.423995
Target:  5'- uGCCGGgcc-GCCaGCUCGGUGAccaUGCg -3'
miRNA:   3'- -CGGUCaacaCGG-CGAGCCACUag-ACG- -5'
12854 5' -54.5 NC_003387.1 + 30239 0.71 0.423995
Target:  5'- cGCCAGUUG-GCCGggucgUCGG-GGUCgGCg -3'
miRNA:   3'- -CGGUCAACaCGGCg----AGCCaCUAGaCG- -5'
12854 5' -54.5 NC_003387.1 + 15826 0.72 0.377711
Target:  5'- cGCCGGUUGUgacGCCGacgCGGUGcccGUCgGCg -3'
miRNA:   3'- -CGGUCAACA---CGGCga-GCCAC---UAGaCG- -5'
12854 5' -54.5 NC_003387.1 + 45240 0.74 0.311041
Target:  5'- aGCgGGUgcggGUGCgCgGCUCGGUGAUCgccugGCc -3'
miRNA:   3'- -CGgUCAa---CACG-G-CGAGCCACUAGa----CG- -5'
12854 5' -54.5 NC_003387.1 + 10389 1.14 0.000516
Target:  5'- aGCCAGUUGUGCCGCUCGGUGAUCUGCu -3'
miRNA:   3'- -CGGUCAACACGGCGAGCCACUAGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.