Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12854 | 5' | -54.5 | NC_003387.1 | + | 10389 | 1.14 | 0.000516 |
Target: 5'- aGCCAGUUGUGCCGCUCGGUGAUCUGCu -3' miRNA: 3'- -CGGUCAACACGGCGAGCCACUAGACG- -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 45240 | 0.74 | 0.311041 |
Target: 5'- aGCgGGUgcggGUGCgCgGCUCGGUGAUCgccugGCc -3' miRNA: 3'- -CGgUCAa---CACG-G-CGAGCCACUAGa----CG- -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 15826 | 0.72 | 0.377711 |
Target: 5'- cGCCGGUUGUgacGCCGacgCGGUGcccGUCgGCg -3' miRNA: 3'- -CGGUCAACA---CGGCga-GCCAC---UAGaCG- -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 30239 | 0.71 | 0.423995 |
Target: 5'- cGCCAGUUG-GCCGggucgUCGG-GGUCgGCg -3' miRNA: 3'- -CGGUCAACaCGGCg----AGCCaCUAGaCG- -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 15552 | 0.71 | 0.423995 |
Target: 5'- uGCCGGgcc-GCCaGCUCGGUGAccaUGCg -3' miRNA: 3'- -CGGUCaacaCGG-CGAGCCACUag-ACG- -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 48825 | 0.71 | 0.443435 |
Target: 5'- cGCCGGUcGUGCUGCUCGGcgcGA-CgcacgGCg -3' miRNA: 3'- -CGGUCAaCACGGCGAGCCa--CUaGa----CG- -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 34649 | 0.7 | 0.504571 |
Target: 5'- cGUCAGgaucggGUGCCGCUgggcaacgcCGGUGAaguUCUGa -3' miRNA: 3'- -CGGUCaa----CACGGCGA---------GCCACU---AGACg -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 33521 | 0.69 | 0.558141 |
Target: 5'- cGCCAGcaagGUGCCGCacauUCGGcg--CUGCc -3' miRNA: 3'- -CGGUCaa--CACGGCG----AGCCacuaGACG- -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 26843 | 0.68 | 0.597691 |
Target: 5'- cGCCGGggagcaccagGCCGCUCGGcaa-CUGCa -3' miRNA: 3'- -CGGUCaaca------CGGCGAGCCacuaGACG- -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 6132 | 0.68 | 0.603224 |
Target: 5'- uGCCGGUgcUGgcgacccugcccgagGCCGauugggUCGGUGAgUCUGCg -3' miRNA: 3'- -CGGUCA--ACa--------------CGGCg-----AGCCACU-AGACG- -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 32605 | 0.67 | 0.657593 |
Target: 5'- uGUCGGUguugGUGCCG-UCGGUGuacCUGg -3' miRNA: 3'- -CGGUCAa---CACGGCgAGCCACua-GACg -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 14233 | 0.67 | 0.668658 |
Target: 5'- cGCCcacg--GCCGCUCGG-GAUCggGCc -3' miRNA: 3'- -CGGucaacaCGGCGAGCCaCUAGa-CG- -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 14887 | 0.66 | 0.732854 |
Target: 5'- gGCgCAGggGUGCCcgaccucGCUCGGcccGAUC-GCg -3' miRNA: 3'- -CG-GUCaaCACGG-------CGAGCCa--CUAGaCG- -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 1660 | 0.66 | 0.733918 |
Target: 5'- gGCaCAGUUGUGCUGCugcaaUCGG-GAgucuaaaUUGCg -3' miRNA: 3'- -CG-GUCAACACGGCG-----AGCCaCUa------GACG- -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 7946 | 0.66 | 0.733918 |
Target: 5'- gGCCAGcUUGUcgaggucggGCCGCUucacggCGGgcgGGUgCUGCg -3' miRNA: 3'- -CGGUC-AACA---------CGGCGA------GCCa--CUA-GACG- -5' |
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12854 | 5' | -54.5 | NC_003387.1 | + | 5331 | 0.66 | 0.754964 |
Target: 5'- gGCCGGUUGccCCGCgcuugCGGUG-UCgGUg -3' miRNA: 3'- -CGGUCAACacGGCGa----GCCACuAGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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