miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12857 5' -50.9 NC_003387.1 + 28140 0.66 0.922527
Target:  5'- cUGCGCGUGauugaGGCCGUCGG--UGUUg -3'
miRNA:   3'- -ACGUGCAUgag--CUGGUAGCUgaACAG- -5'
12857 5' -50.9 NC_003387.1 + 26185 0.66 0.922527
Target:  5'- cGuCGCGUGCUUG-CCugaCGGCUcGUCg -3'
miRNA:   3'- aC-GUGCAUGAGCuGGua-GCUGAaCAG- -5'
12857 5' -50.9 NC_003387.1 + 9857 0.66 0.922527
Target:  5'- cGC-CGUcCUCGACCuugAUCGACUg--- -3'
miRNA:   3'- aCGuGCAuGAGCUGG---UAGCUGAacag -5'
12857 5' -50.9 NC_003387.1 + 1114 0.66 0.922527
Target:  5'- aGCGCGggUUCGGCCGuggguUCGcCggUGUCg -3'
miRNA:   3'- aCGUGCauGAGCUGGU-----AGCuGa-ACAG- -5'
12857 5' -50.9 NC_003387.1 + 30473 0.66 0.916248
Target:  5'- gUGCACcaaGUGCUUc-CCGUCGGCgccgGUCg -3'
miRNA:   3'- -ACGUG---CAUGAGcuGGUAGCUGaa--CAG- -5'
12857 5' -50.9 NC_003387.1 + 43612 0.66 0.914957
Target:  5'- aGCACcuugaaugucgGCUCGaauGCCAUCGGCUcGUUg -3'
miRNA:   3'- aCGUGca---------UGAGC---UGGUAGCUGAaCAG- -5'
12857 5' -50.9 NC_003387.1 + 48979 0.66 0.909675
Target:  5'- gUGCACGcggGCaugCGGCCGUCGAUcgcgUGg- -3'
miRNA:   3'- -ACGUGCa--UGa--GCUGGUAGCUGa---ACag -5'
12857 5' -50.9 NC_003387.1 + 24475 0.66 0.909675
Target:  5'- cUGUACGaaccGCUCGACgAUCuGCUcgGUCg -3'
miRNA:   3'- -ACGUGCa---UGAGCUGgUAGcUGAa-CAG- -5'
12857 5' -50.9 NC_003387.1 + 37863 0.66 0.898552
Target:  5'- cGCAgGUACUuguagagcUGGCCGUCGACcggaucuuucucgGUCg -3'
miRNA:   3'- aCGUgCAUGA--------GCUGGUAGCUGaa-----------CAG- -5'
12857 5' -50.9 NC_003387.1 + 51178 0.66 0.895656
Target:  5'- aUGCACGUACgccuggCGAUCcUCGGCa---- -3'
miRNA:   3'- -ACGUGCAUGa-----GCUGGuAGCUGaacag -5'
12857 5' -50.9 NC_003387.1 + 4191 0.66 0.895656
Target:  5'- gGCGCgGUGCuUCGGCCAcCG-CgUGUCg -3'
miRNA:   3'- aCGUG-CAUG-AGCUGGUaGCuGaACAG- -5'
12857 5' -50.9 NC_003387.1 + 18282 0.67 0.8805
Target:  5'- cGCAC-UACUCGACCAgcgcCGACccgGcCg -3'
miRNA:   3'- aCGUGcAUGAGCUGGUa---GCUGaa-CaG- -5'
12857 5' -50.9 NC_003387.1 + 13650 0.67 0.8805
Target:  5'- cGUcgGCGgcgGCUCGgucgccgagggcGCCGUCGACgcuaUGUCg -3'
miRNA:   3'- aCG--UGCa--UGAGC------------UGGUAGCUGa---ACAG- -5'
12857 5' -50.9 NC_003387.1 + 48258 0.67 0.8805
Target:  5'- cGCgGCGgGCUCGGCgGUCGGCUcGg- -3'
miRNA:   3'- aCG-UGCaUGAGCUGgUAGCUGAaCag -5'
12857 5' -50.9 NC_003387.1 + 23963 0.67 0.872509
Target:  5'- aGCACGUGCgcagCG-CCGggCGGCUgGUUg -3'
miRNA:   3'- aCGUGCAUGa---GCuGGUa-GCUGAaCAG- -5'
12857 5' -50.9 NC_003387.1 + 19119 0.67 0.864251
Target:  5'- gGCGCGcAgUCGAUCAUCGACc---- -3'
miRNA:   3'- aCGUGCaUgAGCUGGUAGCUGaacag -5'
12857 5' -50.9 NC_003387.1 + 29343 0.67 0.850506
Target:  5'- aGCuCGUcggcgacccgaaucaGCUCGGCCAUC-ACUUGcUCg -3'
miRNA:   3'- aCGuGCA---------------UGAGCUGGUAGcUGAAC-AG- -5'
12857 5' -50.9 NC_003387.1 + 190 0.67 0.84697
Target:  5'- gUGCuCG-ACUCGGCCcgCGACaUUGcCg -3'
miRNA:   3'- -ACGuGCaUGAGCUGGuaGCUG-AACaG- -5'
12857 5' -50.9 NC_003387.1 + 48135 0.67 0.843395
Target:  5'- cGCGCGuucgagcUugUCGGCCucggcgagcagcuuGUCGGcCUUGUCg -3'
miRNA:   3'- aCGUGC-------AugAGCUGG--------------UAGCU-GAACAG- -5'
12857 5' -50.9 NC_003387.1 + 38394 0.68 0.837962
Target:  5'- cUGCACGacCUCGACC-UCGACa---- -3'
miRNA:   3'- -ACGUGCauGAGCUGGuAGCUGaacag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.